Updated Genome Sequence and Annotation for the Full Genome of Pseudomonas protegens CHA0

Theo H M Smits; Fabio Rezzonico; David Frasson; Pilar Vesga; Jordan Vacheron; Jochen Blom; Joël F Pothier; Christoph Keel; Monika Maurhofer; Martin Sievers

doi:10.1128/MRA.01002-19

Updated Genome Sequence and Annotation for the Full Genome of Pseudomonas protegens CHA0

Microbiol Resour Announc. 2019 Sep 26;8(39):e01002-19. doi: 10.1128/MRA.01002-19.

Authors

Affiliations

¹ Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.
² Microbiology and Molecular Biology Research Group, Institute of Chemistry and Biotechnology, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.
³ ETH Zür, Plant Pathology, Institute of Integrative Biology, Zurich, Switzerland.
⁴ Department of Fundamental Microbiology, Quartier UNIL-Sorge, University of Lausanne, Lausanne, Switzerland.
⁵ Bioinformatics and Systems Biology, Justus-Liebig-Universität, Giessen, Germany.
⁶ Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland [email protected].

Abstract

Minor differences in the previously obtained genome of Pseudomonas protegens CHA0 were detected after resequencing the strain. Based on this, the genome size slightly increased. Additionally, we performed a manual annotation of genes involved in biocontrol and insect pathogenicity. This annotation version will be the basis for upcoming genome studies.