Molecular and phenotypic characterization of an early T-cell precursor acute lymphoblastic lymphoma harboring PICALM-MLLT10 fusion with aberrant expression of B-cell antigens

Cancer Genet. 2020 Jan:240:40-44. doi: 10.1016/j.cancergen.2019.11.002. Epub 2019 Nov 9.

Abstract

T-cell acute lymphoblastic leukemia/lymphoma (T-ALL/LBL) is usually diagnosed based on the presence of immature lymphoid marker terminal deoxynucleotidyl transferase (TdT), and T-cell specific markers, specifically CD3, by immunohistochemistry (IHC) staining on bone marrow and/or extramedullary tissue. We present a novel, TdT and CD3 negative, aggressive early T-cell precursor LBL (ETP-LBL) initially misdiagnosed as a high grade B-cell lymphoma due to expression of CD79a and the erroneous detection of BCL2/IGH fusion. The patient was eventually evaluated using molecular diagnostic techniques, including fluorescence in situ hybridization (FISH) and next generation sequencing (NGS) assays that demonstrated PICALM-MLLT10 fusion and a NOTCH1 mutation in the absence of BCL2/IGH fusion. The use of NGS, specifically mate-pair sequencing (MPseq), subsequently confirmed an in-frame PICALM-MLLT10 fusion. Our retrospective analysis showed that PICALM-MLLT10 fusion has no association with CD3/TdT negativity, as 6/49 T-ALL/LBL cases from Mayo Clinic database (01/1998-09/2018), including this case, were noted to have PICALM-MLLT10 fusion; however, none of the other cases were associated with CD3/TdT negativity. We emphasize the importance of a comprehensive hematopathologic evaluation including multiple molecular studies for the appropriate interrogation and classification of a difficult acute leukemia diagnosis, and to prevent potential diagnostic errors of clinical significance.

Keywords: Early T-cell precursor LBL (ETP-LBL); Fluorescence in situ hybridization (FISH); Immunohistochemistry (IHC); Mate-pair sequencing (MPseq); Next generation sequencing (NGS); PICALM-MLLT10.

Publication types

  • Case Reports

MeSH terms

  • Adult
  • B-Lymphocytes / immunology*
  • B-Lymphocytes / metabolism
  • Biopsy
  • CD79 Antigens / analysis
  • CD79 Antigens / immunology
  • CD79 Antigens / metabolism*
  • Diagnostic Errors
  • Humans
  • Lymphoma, B-Cell / blood
  • Lymphoma, B-Cell / diagnosis
  • Lymphoma, B-Cell / genetics
  • Lymphoma, B-Cell / immunology
  • Male
  • Mediastinal Neoplasms / blood
  • Mediastinal Neoplasms / diagnosis*
  • Mediastinal Neoplasms / genetics
  • Mediastinal Neoplasms / immunology
  • Mediastinum / diagnostic imaging
  • Mediastinum / pathology
  • Oncogene Proteins, Fusion / genetics*
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / blood
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / diagnosis*
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / genetics
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / immunology
  • Tomography, X-Ray Computed

Substances

  • BCL2-IgH fusion protein, human
  • CD79 Antigens
  • CD79A protein, human
  • Oncogene Proteins, Fusion
  • PICALM-MLLT10 fusion protein, human