Detection of mesial temporal lobe epileptiform discharges on intracranial electrodes using deep learning

Clin Neurophysiol. 2020 Jan;131(1):133-141. doi: 10.1016/j.clinph.2019.09.031. Epub 2019 Nov 11.

Abstract

Objective: Develop a high-performing algorithm to detect mesial temporal lobe (mTL) epileptiform discharges on intracranial electrode recordings.

Methods: An epileptologist annotated 13,959 epileptiform discharges from a dataset of intracranial EEG recordings from 46 epilepsy patients. Using this dataset, we trained a convolutional neural network (CNN) to recognize mTL epileptiform discharges from a single intracranial bipolar channel. The CNN outputs from multiple bipolar channel inputs were averaged to generate the final detector output. Algorithm performance was estimated using a nested 5-fold cross-validation.

Results: On the receiver-operating characteristic curve, our algorithm achieved an area under the curve (AUC) of 0.996 and a partial AUC (for specificity > 0.9) of 0.981. AUC on a precision-recall curve was 0.807. A sensitivity of 84% was attained at a false positive rate of 1 per minute. 35.9% of the false positive detections corresponded to epileptiform discharges that were missed during expert annotation.

Conclusions: Using deep learning, we developed a high-performing, patient non-specific algorithm for detection of mTL epileptiform discharges on intracranial electrodes.

Significance: Our algorithm has many potential applications for understanding the impact of mTL epileptiform discharges in epilepsy and on cognition, and for developing therapies to specifically reduce mTL epileptiform activity.

Keywords: Convolutional neural networks; Deep learning; Epileptiform discharges; Spike detection; Temporal lobe epilepsy.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Algorithms*
  • Area Under Curve
  • Artifacts
  • Datasets as Topic
  • Deep Learning*
  • Electrocorticography / instrumentation*
  • Electrocorticography / methods
  • Electrocorticography / standards
  • Electrodes, Implanted*
  • Epilepsy, Temporal Lobe / diagnosis
  • Epilepsy, Temporal Lobe / physiopathology*
  • Female
  • Foramen Ovale / physiopathology
  • Humans
  • Male
  • ROC Curve
  • Reference Standards
  • Sensitivity and Specificity
  • Temporal Lobe / physiopathology*