Mutagenic Effects of a 2-Deoxyribonolactone-Thymine Glycol Tandem DNA Lesion in Human Cells

Biochemistry. 2020 Feb 4;59(4):417-424. doi: 10.1021/acs.biochem.9b01058. Epub 2019 Dec 30.

Abstract

Tandem DNA lesions containing two contiguously damaged nucleotides are commonly formed by ionizing radiation. Their effects on replication in mammalian cells are largely unknown. Replication of isolated 2-deoxyribonolactone (L), thymine glycol (Tg), and tandem lesion 5'-LTg was examined in human cells. Although nearly 100% of Tg was bypassed in HEK 293T cells, L was a significant replication block. 5'-LTg was an even stronger replication block with 5% TLS efficiency. The mutation frequency (MF) of Tg was 3.4%, which increased to 3.9% and 4.8% in pol ι- and pol κ-deficient cells, respectively. An even greater increase in the MF of Tg (to ∼5.5%) was observed in cells deficient in both pol κ and pol ζ, suggesting that they work together to bypass Tg in an error-free manner. Isolated L bypass generated 12-18% one-base deletions, which increased as much as 60% in TLS polymerase-deficient cells. The fraction of deletion products also increased in TLS polymerase-deficient cells upon 5'-LTg bypass. In full-length products and in all cell types, dA was preferentially incorporated opposite an isolated L as well as when it was part of a tandem lesion. However, misincorporation opposite Tg increased significantly when it was part of a tandem lesion. In wild type cells, targeted mutations increased about 3-fold to 9.7% and to 17.4, 15.9, and 28.8% in pol κ-, pol ζ-, and pol ι-deficient cells, respectively. Overall, Tg is significantly more miscoding as part of a tandem lesion, and error-free Tg replication in HEK 293T cells requires participation of the TLS polymerases.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • DNA / metabolism
  • DNA Damage / radiation effects
  • DNA Polymerase iota
  • DNA Repair / physiology
  • DNA Repair / radiation effects
  • DNA Replication / radiation effects*
  • DNA-Directed DNA Polymerase / metabolism
  • DNA-Directed DNA Polymerase / physiology
  • HEK293 Cells
  • Humans
  • Mutagenesis / radiation effects
  • Mutagens
  • Nucleotides / chemistry
  • Sugar Acids / chemistry*
  • Sugar Acids / radiation effects
  • Thymine / analogs & derivatives*
  • Thymine / chemistry
  • Thymine / radiation effects

Substances

  • Mutagens
  • Nucleotides
  • Sugar Acids
  • thymine glycol
  • 2,4,5-trihydroxypentanoic acid gamma-lactone
  • DNA
  • DNA-Directed DNA Polymerase
  • Thymine
  • DNA Polymerase iota
  • POLI protein, human