Enzyme-free visualization of nucleic acids during HIV infection by octopus-like DNA

Int J Biol Macromol. 2020 May 1:150:122-128. doi: 10.1016/j.ijbiomac.2020.02.063. Epub 2020 Feb 8.

Abstract

It is highly desirable to develop a facile approach for the detection of the human immunodeficiency virus (HIV). To address this need, an octopus-like DNA (OLD) is designed in a one-pot method by direct folding of nine short single strands of DNA (ssDNA), which can be used to capture all the conserved HIV-1 gene efficiently though the sticky arms. The branched OLD was applied for the enzyme-free detection of HIV-1 nucleic acid and the visualization of the virus during HIV infection. The total detection procedure can be finished within 2 h with high specificity, making the OLD system a valuable tool for the rapid detection of HIV virus and further biomedical application.

Keywords: Branched DNA; Enzyme-free; HIV detection.

MeSH terms

  • Base Sequence
  • Biomarkers
  • DNA, Single-Stranded / chemistry
  • DNA, Viral / chemistry
  • Fluorescent Antibody Technique
  • Genes, Viral
  • HIV-1 / genetics*
  • Humans
  • Molecular Imaging*
  • Nucleic Acid Conformation
  • Nucleic Acid Hybridization / methods
  • Nucleic Acids* / chemistry

Substances

  • Biomarkers
  • DNA, Single-Stranded
  • DNA, Viral
  • Nucleic Acids