A nanobody targeting the LIN28:let-7 interaction fragment of TUT4 blocks uridylation of let-7

Proc Natl Acad Sci U S A. 2020 Mar 3;117(9):4653-4663. doi: 10.1073/pnas.1919409117. Epub 2020 Feb 14.

Abstract

The LIN28:pre-let-7:TUTase ternary complex regulates pluripotency and oncogenesis by controlling processing of the let-7 family of microRNAs. The complex oligouridylates the 3' ends of pre-let-7 molecules, leading to their degradation via the DIS3L2 exonuclease. Previous studies suggest that components of this complex are potential therapeutic targets in malignancies that aberrantly express LIN28. In this study we developed a functional epitope selection approach to identify nanobody inhibitors of the LIN28:pre-let-7:TUT4 complex. We demonstrate that one of the identified nanobodies, Nb-S2A4, targets the 106-residue LIN28:let-7 interaction (LLI) fragment of TUT4. Nb-S2A4 can effectively inhibit oligouridylation and monouridylation of pre-let-7g in vitro. Expressing Nb-S2A4 allows maturation of the let-7 species in cells expressing LIN28, highlighting the therapeutic potential of targeting the LLI fragment.

Keywords: LIN28; TUT4; let-7; nanobody; oligouridylation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / immunology*
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Mice
  • MicroRNAs / genetics
  • MicroRNAs / metabolism*
  • Protein Binding
  • RNA 3' End Processing*
  • RNA Stability
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Sf9 Cells
  • Single-Domain Antibodies / immunology*
  • Spodoptera

Substances

  • DNA-Binding Proteins
  • Lin28A protein, human
  • MicroRNAs
  • RNA-Binding Proteins
  • Single-Domain Antibodies
  • TUT4 protein, human
  • mirnlet7 microRNA, human

Associated data

  • GENBANK/MN752861
  • GENBANK/MN752862
  • GENBANK/MN752864
  • GENBANK/MN752863
  • GENBANK/MN752852
  • GENBANK/MN752853
  • GENBANK/MN752854
  • GENBANK/MN752855
  • GENBANK/MN752856
  • GENBANK/MN752857
  • GENBANK/MN752858
  • GENBANK/MN752859
  • GENBANK/MN752860