High-throughput enrichment of temperature-sensitive argininosuccinate synthetase for two-stage citrulline production in E. coli

Metab Eng. 2020 Jul:60:14-24. doi: 10.1016/j.ymben.2020.03.004. Epub 2020 Mar 13.

Abstract

Controlling metabolism of engineered microbes is important to modulate cell growth and production during a bioprocess. For example, external parameters such as light, chemical inducers, or temperature can act on metabolism of production strains by changing the abundance or activity of enzymes. Here, we created temperature-sensitive variants of an essential enzyme in arginine biosynthesis of Escherichia coli (argininosuccinate synthetase, ArgG) and used them to dynamically control citrulline overproduction and growth of E. coli. We show a method for high-throughput enrichment of temperature-sensitive ArgG variants with a fluorescent TIMER protein and flow cytometry. With 90 of the thus derived ArgG variants, we complemented an ArgG deletion strain showing that 90% of the strains exhibit temperature-sensitive growth and 69% of the strains are auxotrophic for arginine at 42 °C and prototrophic at 30 °C. The best temperature-sensitive ArgG variant enabled precise and tunable control of cell growth by temperature changes. Expressing this variant in a feedback-dysregulated E. coli strain allowed us to realize a two-stage bioprocess: a 33 °C growth-phase for biomass accumulation and a 39 °C stationary-phase for citrulline production. With this two-stage strategy, we produced 3 g/L citrulline during 45 h cultivation in a 1-L bioreactor. These results show that temperature-sensitive enzymes can be created en masse and that they may function as metabolic valves in engineered bacteria.

Keywords: Citrulline overproduction; Flow cytometry; Single-cell growth; Temperature-sensitive enzymes; Two-stage bioprocess.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arginine
  • Argininosuccinate Synthase / genetics*
  • Argininosuccinate Synthase / metabolism*
  • Biomass
  • Citrulline / biosynthesis*
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / genetics*
  • Escherichia coli Proteins / metabolism*
  • Flow Cytometry
  • Glucose / metabolism
  • Metabolic Engineering / methods*
  • Plasmids / genetics
  • Proteomics
  • Temperature

Substances

  • Escherichia coli Proteins
  • Citrulline
  • Arginine
  • ArgG protein, E coli
  • Argininosuccinate Synthase
  • Glucose