Emerging coexistence of three PMQR genes on a multiple resistance plasmid with a new surrounding genetic structure of qnrS2 in E. coli in China

Antimicrob Resist Infect Control. 2020 Apr 15;9(1):52. doi: 10.1186/s13756-020-00711-y.

Abstract

Background: Quinolones are commonly used for treatment of infections by bacteria of the Enterobacteriaceae family. However, the rising resistance to quinolones worldwide poses a major clinical and public health risk. This study aimed to characterise a novel multiple resistance plasmid carrying three plasmid-mediated quinolone resistance genes in Escherichia coli clinical stain RJ749.

Methods: MICs of ceftriaxone, cefepime, ceftazidime, ciprofloxacin, and levofloxacin for RJ749 and transconjugant c749 were determined by the Etest method. Conjugation was performed using sodium azide-resistant E. coli J53 strain as a recipient. The quinolone resistance-determining regions of gyrA, gyrB, parC, and parE were PCR-amplified.

Results: RJ749 was highly resistant to quinolones, while c749 showed low-level resistance. S1-nuclease pulsed-field gel electrophoresis revealed that RJ749 and c749 both harboured a plasmid. PCR presented chromosomal mutation sites of the quinolone resistance-determining region, which mediated quinolone resistance. The c749 genome comprised a single plasmid, pRJ749, with a multiple resistance region, including three plasmid-mediated quinolone resistance (PMQR) genes (aac (6')-Ib-cr, qnrS2, and oqxAB) and ten acquired resistance genes. One of the genes, qnrS2, was shown for the first time to be flanked by two IS26s. Three IS26-mediated circular molecules carrying the PMQR genes were detected.

Conclusions: We revealed the coexistence of three PMQR genes on a multiple resistance plasmid and a new surrounding genetic structure of qnrS2 flanked by IS26 elements. IS26 plays an important role in horizontal spread of quinolone resistance.

Keywords: Antibiotic resistance; Escherichia coli; Horizontal gene transfer; PMQR; Plasmid; qnrS2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / pharmacology*
  • Cefepime / pharmacology
  • Ceftazidime / pharmacology
  • Ceftriaxone / pharmacology
  • China
  • Ciprofloxacin / pharmacology
  • Drug Resistance, Multiple, Bacterial*
  • Escherichia coli / classification*
  • Escherichia coli / drug effects
  • Escherichia coli / genetics
  • Escherichia coli Proteins / genetics*
  • Genome Size
  • Levofloxacin / pharmacology
  • Microbial Sensitivity Tests
  • Mutation
  • Plasmids / genetics*
  • Whole Genome Sequencing / methods

Substances

  • Anti-Bacterial Agents
  • Escherichia coli Proteins
  • Ciprofloxacin
  • Levofloxacin
  • Ceftriaxone
  • Cefepime
  • Ceftazidime