A network of RNA-binding proteins controls translation efficiency to activate anaerobic metabolism

Nat Commun. 2020 May 29;11(1):2677. doi: 10.1038/s41467-020-16504-1.

Abstract

Protein expression evolves under greater evolutionary constraint than mRNA levels, and translation efficiency represents a primary determinant of protein levels during stimuli adaptation. This raises the question as to the translatome remodelers that titrate protein output from mRNA populations. Here, we uncover a network of RNA-binding proteins (RBPs) that enhances the translation efficiency of glycolytic proteins in cells responding to oxygen deprivation. A system-wide proteomic survey of translational engagement identifies a family of oxygen-regulated RBPs that functions as a switch of glycolytic intensity. Tandem mass tag-pulse SILAC (TMT-pSILAC) and RNA sequencing reveals that each RBP controls a unique but overlapping portfolio of hypoxic responsive proteins. These RBPs collaborate with the hypoxic protein synthesis apparatus, operating as a translation efficiency checkpoint that integrates upstream mRNA signals to activate anaerobic metabolism. This system allows anoxia-resistant animals and mammalian cells to initiate anaerobic glycolysis and survive hypoxia. We suggest that an oxygen-sensitive RBP cluster controls anaerobic metabolism to confer hypoxia tolerance.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3T3 Cells
  • A549 Cells
  • Anaerobiosis / physiology*
  • Animals
  • Caenorhabditis elegans / metabolism
  • Cell Hypoxia / physiology*
  • Cell Line, Tumor
  • Gene Expression Profiling
  • Glycolysis / physiology*
  • HCT116 Cells
  • Humans
  • Mice
  • Oxygen / metabolism
  • PC-3 Cells
  • Protein Biosynthesis / physiology
  • Protein Processing, Post-Translational / genetics
  • Proteomics
  • RNA, Messenger / genetics
  • RNA-Binding Proteins / metabolism*

Substances

  • RNA, Messenger
  • RNA-Binding Proteins
  • Oxygen