A non-linear system patterns Rab5 GTPase on the membrane

Elife. 2020 Jun 8:9:e54434. doi: 10.7554/eLife.54434.

Abstract

Proteins can self-organize into spatial patterns via non-linear dynamic interactions on cellular membranes. Modelling and simulations have shown that small GTPases can generate patterns by coupling guanine nucleotide exchange factors (GEF) to effectors, generating a positive feedback of GTPase activation and membrane recruitment. Here, we reconstituted the patterning of the small GTPase Rab5 and its GEF/effector complex Rabex5/Rabaptin5 on supported lipid bilayers. We demonstrate a 'handover' of Rab5 from Rabex5 to Rabaptin5 upon nucleotide exchange. A minimal system consisting of Rab5, RabGDI and a complex of full length Rabex5/Rabaptin5 was necessary to pattern Rab5 into membrane domains. Rab5 patterning required a lipid membrane composition mimicking that of early endosomes, with PI(3)P enhancing membrane recruitment of Rab5 and acyl chain packing being critical for domain formation. The prevalence of GEF/effector coupling in nature suggests a possible universal system for small GTPase patterning involving both protein and lipid interactions.

Keywords: GTPase domain; Rab5; biochemistry; chemical biology; endocytosis; none; pattern formation; reconstitution; self-organization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • Cell Membrane* / chemistry
  • Cell Membrane* / metabolism
  • Endosomes
  • Guanine Nucleotide Exchange Factors* / chemistry
  • Guanine Nucleotide Exchange Factors* / genetics
  • Guanine Nucleotide Exchange Factors* / metabolism
  • Humans
  • Liposomes / chemistry
  • Liposomes / metabolism
  • Phosphatidylinositol Phosphates / metabolism
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Sf9 Cells
  • Vesicular Transport Proteins* / chemistry
  • Vesicular Transport Proteins* / genetics
  • Vesicular Transport Proteins* / metabolism
  • rab5 GTP-Binding Proteins* / chemistry
  • rab5 GTP-Binding Proteins* / genetics
  • rab5 GTP-Binding Proteins* / metabolism

Substances

  • Guanine Nucleotide Exchange Factors
  • Liposomes
  • Phosphatidylinositol Phosphates
  • Recombinant Fusion Proteins
  • Vesicular Transport Proteins
  • phosphatidylinositol 3-phosphate
  • rab5 GTP-Binding Proteins