Repurposing type I-F CRISPR-Cas system as a transcriptional activation tool in human cells

Nat Commun. 2020 Jun 19;11(1):3136. doi: 10.1038/s41467-020-16880-8.

Abstract

Class 2 CRISPR-Cas proteins have been widely developed as genome editing and transcriptional regulating tools. Class 1 type I CRISPR-Cas constitutes ~60% of all the CRISPR-Cas systems. However, only type I-B and I-E systems have been used to control mammalian gene expression and for genome editing. Here we demonstrate the feasibility of using type I-F system to regulate human gene expression. By fusing transcription activation domain to Pseudomonas aeruginosa type I-F Cas proteins, we activate gene transcription in human cells. In most cases, type I-F system is more efficient than other CRISPR-based systems. Transcription activation is enhanced by elongating the crRNA. In addition, we achieve multiplexed gene activation with a crRNA array. Furthermore, type I-F system activates target genes specifically without off-target transcription activation. These data demonstrate the robustness and programmability of type I-F CRISPR-Cas in human cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / isolation & purification
  • Bacterial Proteins / metabolism*
  • CRISPR-Associated Proteins / genetics
  • CRISPR-Associated Proteins / isolation & purification
  • CRISPR-Associated Proteins / metabolism*
  • CRISPR-Cas Systems / genetics*
  • Clustered Regularly Interspaced Short Palindromic Repeats / genetics*
  • Gene Editing / methods*
  • HEK293 Cells
  • Humans
  • Pseudomonas aeruginosa / genetics
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Transcriptional Activation
  • Transfection

Substances

  • Bacterial Proteins
  • CRISPR-Associated Proteins
  • Recombinant Proteins