Elucidating the Origin of Heterogeneous Anomalous Diffusion in the Cytoplasm of Mammalian Cells

Phys Rev Lett. 2020 Jul 31;125(5):058101. doi: 10.1103/PhysRevLett.125.058101.

Abstract

Diffusion of tracer particles in the cytoplasm of mammalian cells is often anomalous with a marked heterogeneity even within individual particle trajectories. Despite considerable efforts, the mechanisms behind these observations have remained largely elusive. To tackle this problem, we performed extensive single-particle tracking experiments on quantum dots in the cytoplasm of living mammalian cells at varying conditions. Analyses of the trajectories reveal a strong, microtubule-dependent subdiffusion with antipersistent increments and a substantial heterogeneity. Furthermore, particles stochastically switch between different mobility states, most likely due to transient associations with the cytoskeleton-shaken endoplasmic reticulum network. Comparison to simulations highlight that all experimental observations can be fully described by an intermittent fractional Brownian motion, alternating between two states of different mobility.

MeSH terms

  • Actin Cytoskeleton / metabolism
  • Bridged Bicyclo Compounds, Heterocyclic / pharmacology
  • Computer Simulation
  • Cytochalasin D / pharmacology
  • Cytoplasm / drug effects
  • Cytoplasm / metabolism*
  • Cytoskeleton / drug effects
  • Cytoskeleton / metabolism
  • Diffusion
  • Endoplasmic Reticulum / drug effects
  • Endoplasmic Reticulum / metabolism
  • HeLa Cells
  • Humans
  • Microtubules / drug effects
  • Microtubules / metabolism
  • Models, Biological*
  • Nocodazole / pharmacology
  • Quantum Dots
  • Stochastic Processes
  • Thiazolidines / pharmacology

Substances

  • Bridged Bicyclo Compounds, Heterocyclic
  • Thiazolidines
  • Cytochalasin D
  • Nocodazole
  • latrunculin A