The Atoh7 remote enhancer provides transcriptional robustness during retinal ganglion cell development

Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21690-21700. doi: 10.1073/pnas.2006888117. Epub 2020 Aug 17.

Abstract

The retinal ganglion cell (RGC) competence factor ATOH7 is dynamically expressed during retinal histogenesis. ATOH7 transcription is controlled by a promoter-adjacent primary enhancer and a remote shadow enhancer (SE). Deletion of the ATOH7 human SE causes nonsyndromic congenital retinal nonattachment (NCRNA) disease, characterized by optic nerve aplasia and total blindness. We used genome editing to model NCRNA in mice. Deletion of the murine SE reduces Atoh7 messenger RNA (mRNA) fivefold but does not recapitulate optic nerve loss; however, SEdel/knockout (KO) trans heterozygotes have thin optic nerves. By analyzing Atoh7 mRNA and protein levels, RGC development and survival, and chromatin landscape effects, we show that the SE ensures robust Atoh7 transcriptional output. Combining SE deletion and KO and wild-type alleles in a genotypic series, we determined the amount of Atoh7 needed to produce a normal complement of adult RGCs, and the secondary consequences of graded reductions in Atoh7 dosage. Together, these data reveal the workings of an evolutionary fail-safe, a duplicate enhancer mechanism that is hard-wired in the machinery of vertebrate retinal ganglion cell genesis.

Keywords: glaucoma; human genetic disorders; optic disc area; optic nerve; shadow enhancer.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Basic Helix-Loop-Helix Transcription Factors / genetics
  • Basic Helix-Loop-Helix Transcription Factors / metabolism*
  • Cell Differentiation
  • Embryo, Mammalian / metabolism
  • Female
  • Gene Expression Regulation, Developmental / genetics
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism*
  • Neurogenesis / physiology
  • Optic Nerve / metabolism
  • Regulatory Sequences, Nucleic Acid / genetics
  • Retina / metabolism
  • Retinal Ganglion Cells / metabolism*
  • Retinal Ganglion Cells / physiology*
  • Transcription Factors / metabolism

Substances

  • Atoh7 protein, mouse
  • Basic Helix-Loop-Helix Transcription Factors
  • Nerve Tissue Proteins
  • Transcription Factors