Identification of Clinically Significant Prostate Cancer by Combined PCA3 and AMACR mRNA Detection in Urine Samples

Res Rep Urol. 2020 Sep 17:12:403-413. doi: 10.2147/RRU.S262310. eCollection 2020.

Abstract

Purpose: Preclinical evaluation of PCA3 and AMACR transcript simultaneous detection in urine to diagnose clinical significant prostate cancer (prostate cancer with Gleason score ≥7) in a Russian cohort.

Patients and methods: We analyzed urine samples of patients with a total serum PSA ≥2 ng/mL: 31 men with prostate cancer scheduled for radical prostatectomy, 128 men scheduled for first diagnostic biopsy (prebiopsy cohort). PCA3, AMACR, PSA and GPI transcripts were detected by multiplex reverse transcription quantitative polymerase chain reaction, and the results were used for scores for calculation and statistical analysis.

Results: There was no significant difference between clinically significant and nonsignificant prostate cancer PCA3 scores. However, there was a significant difference in the AMACR score (patients scheduled for radical prostatectomy p=0.0088, prebiopsy cohort p=0.029). We estimated AUCs, optimal cutoffs, sensitivities and specificities for PCa and csPCa detection in the prebiopsy cohort by tPSA, PCA3 score, PCPT Risk Calculator and classification models based on tPSA, PCA3 score and AMACR score. In the clinically significant prostate cancer ROC analysis, the PCA3 score AUC was 0.632 (95%CI: 0.511-0.752), the AMACR score AUC was 0.711 (95%CI: 0.617-0.806) and AUC of classification model based on the PCA3 score, the AMACR score and total PSA was 0.72 (95%CI: 0.58-0.83). In addition, the correlation of the AMACR score with the ratio of total RNA and RNA of prostate cells in urine was shown (tau=0.347, p=6.542e-09). Significant amounts of nonprostate RNA in urine may be a limitation for the AMACR score use.

Conclusion: The AMACR score is a good predictor of clinically significant prostate cancer. Significant amounts of nonprostate RNA in urine may be a limitation for the AMACR score use. Evaluation of the AMACR score and classification models based on it for clinically significant prostate cancer detection with larger samples and a follow-up analysis is promising.

Keywords: RNA; alpha-methylacyl-CoA racemase; early diagnosis; neoplasm grading; prostatic neoplasms.

Grants and funding

Primers and probes design, plasmid construction, reverse transcription and multiplex qPCR condition optimization was supported by the Ministry of Education and Science of Russian Federation (grant no. 14.607.21.0068, Sep 23, 2014, unique ID RFMEFI60714×0068). Prebiopsy cohort urine samples analysis, histopathological examination of biopsy material, statistical analysis of obtained data funded by the Russian Foundation for Basic Research according to the research project no. 17-29-06076 (grant no. 17-29-06076\18, Dec 05, 2018). Urine analysis and histopathological examination of surgical material of patients scheduled for radical prostatectomy, statistical analysis of obtained data funded by the Russian Foundation for Basic Research according to the research project no. 18-315-00363 (grant no. 18-315-00363\19, Mar 07, 2019).