Multi-Shell D-MRI Reconstruction via Residual Learning utilizing Encoder-Decoder Network with Attention (MSR-Net)

Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul:2020:1709-1713. doi: 10.1109/EMBC44109.2020.9175455.

Abstract

Contemporary diffusion MRI based analysis with HARDI, which provides more accurate fiber orientation, can be performed using single or multiple b-values (single or multi-shell). Single shell HARDI cannot provide volume fraction for different tissue types, which can produce bias and noisier results in estimation of fiber ODF. Multi-shell acquisition can resolve this issue. However, it requires more scanning time and is therefore not very well suited in clinical setting. Considering this, we propose a novel deep learning architecture, MSR-Net, for reconstruction of diffusion MRI volumes for some b-value using acquisitions at another b-value. In this work, we demonstrate this for b = 2000 s/mm2 and b = 1000 s/mm2. We learn such a transformation in the space of spherical harmonic coefficients. The proposed network consists of encoder-decoder along-with an attention module and a feature module. We have considered L2 and Content loss for optimizing and improving the performance. We have trained and validated the network using the HCP data-set with standard qualitative and quantitative performance measures.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Attention
  • Diffusion Magnetic Resonance Imaging
  • Magnetic Resonance Imaging*
  • Orientation, Spatial