Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain

Bioengineered. 2020 Dec;11(1):1233-1244. doi: 10.1080/21655979.2020.1837476.

Abstract

Enzymes displaying high activity at low temperatures and good thermostability are attracting attention in many studies. However, improving low-temperature activity along with the thermostability of enzymes remains challenging. In this study, the mutant Mut8S, including eight sites (N61E, K156R, P236E, T243K, D268E, T277D, Q390K, and R409D) mutated from the exo-inulinase InuAGN25, was designed on the basis of increasing the number of salt bridges through comparison between the low-temperature-active InuAGN25 and thermophilic exo-inulinases. The recombinant Mut8S, which was expressed in Escherichia coli, was digested by human rhinovirus 3 C protease to remove the amino acid fusion sequence at N-terminus, producing RfsMut8S. Compared with wild-type RfsMInuAGN25, the mutant RfsMut8S showed (1) lower root mean square deviation values, (2) lower root mean square fluctuation (RMSF) values of residues in six regions of the N and C termini but higher RMSF values in five regions of the catalytic pocket, (3) higher activity at 0-40°C, and (4) better thermostability at 50°C. This study proposes a way to increase low-temperature activity along with a thermostability improvement of exo-inulinase on the basis of increasing the rigidity of the terminus and the flexibility of the catalytic domain. These findings may prove useful in formulating rational designs for increasing the thermal performance of enzymes.

Keywords: Enzyme; biochemical property; mechanism; mutagenesis; structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalytic Domain
  • Enzyme Stability
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Glycoside Hydrolases / genetics
  • Glycoside Hydrolases / metabolism*
  • Kinetics
  • Mutagenesis / genetics
  • Mutagenesis / physiology
  • Temperature

Substances

  • Glycoside Hydrolases
  • inulinase

Grants and funding

This work was supported by the [National Natural Science Foundation of China] under Grant [No. 31660445], [Yunnan Fundamental Research Projects] under Grant [No. 202001AS070022], [Yunnan Ten Thousand Talents Plan Young & Elite Talents Project] under Grant [No. YNWR-QNBJ-2018-383], and [National Innovation and Entrepreneurship Training Program for College Students of China] under Grant [No. 201910681010].