Identification of novel prognostic biomarkers in renal cell carcinoma

Aging (Albany NY). 2020 Nov 21;12(24):25304-25318. doi: 10.18632/aging.104131. Epub 2020 Nov 21.

Abstract

Objective: To identify novel prognostic biomarkers in renal cell carcinoma (RCC).

Results: 12 coding genes and one miRNA were finally identified as prognostic biomarkers. All of them were related to a poor prognosis. Lower expression levels of the coding genes were observed in higher clinical stages. Prognostic signatures including 7 biomarkers were identified. Patients in the high-risk group had worse survival than those in the low-risk group. The areas under the curves in different years indicated that it was a valuable signature in prognosis. It was found that elevated WDR72 inhibited the survival and invasion of 786-O and 769P cells in vitro.

Conclusions: Thirteen prognostic biomarkers of RCC were identified. Among them, 7 biomarkers comprised a signature to evaluate the RCC prognosis. WDR72 was a cancer suppressor and a potential therapeutic target in RCC.

Methods: Differentially expressed genes/miRNAs (DEGs/DEMs) and prognosis-related genes/miRNAs were acquired from public database. Prognostic biomarkers were identified by overlapping the significant DEGs/DEMs and prognosis-related genes/miRNAs. The associations between these biomarkers and the clinical stages were analyzed. All of these prognostic biomarkers were further investigated with multi-variable Cox regression. Finally, the inhibitory effect of WDR72 on the growth and invasion of RCC cells was studied.

Keywords: DFS; OS; WDR72; prognostic signature; renal cell carcinoma.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3-Hydroxyacyl CoA Dehydrogenases / genetics
  • Aldehyde Oxidoreductases / genetics
  • Carcinoma, Renal Cell / genetics*
  • Carcinoma, Renal Cell / mortality
  • Carcinoma, Renal Cell / pathology
  • Cell Line, Tumor
  • Cell Proliferation / genetics
  • Claudins / genetics
  • Databases, Genetic
  • Diacylglycerol Cholinephosphotransferase / genetics
  • Disease-Free Survival
  • Endodeoxyribonucleases / genetics
  • HEK293 Cells
  • Humans
  • Kidney Neoplasms / genetics*
  • Kidney Neoplasms / mortality
  • Kidney Neoplasms / pathology
  • MicroRNAs / genetics
  • Neoplasm Invasiveness
  • Prognosis
  • Proportional Hazards Models
  • Proteins / genetics
  • Survival Rate
  • Transcriptome*

Substances

  • Claudins
  • MIRN21 microRNA, human
  • MicroRNAs
  • Proteins
  • WDR72 protein, human
  • claudin 10
  • 3-Hydroxyacyl CoA Dehydrogenases
  • Aldehyde Oxidoreductases
  • ALDH6A1 protein, human
  • CDS1 protein, human
  • Diacylglycerol Cholinephosphotransferase
  • DNASE1L3 protein, human
  • Endodeoxyribonucleases