Force-dependent stimulation of RNA unwinding by SARS-CoV-2 nsp13 helicase

Biophys J. 2021 Mar 16;120(6):1020-1030. doi: 10.1016/j.bpj.2020.11.2276. Epub 2020 Dec 17.

Abstract

The superfamily 1 helicase nonstructural protein 13 (nsp13) is required for SARS-CoV-2 replication. The mechanism and regulation of nsp13 has not been explored at the single-molecule level. Specifically, force-dependent unwinding experiments have yet to be performed for any coronavirus helicase. Here, using optical tweezers, we find that nsp13 unwinding frequency, processivity, and velocity increase substantially when a destabilizing force is applied to the RNA substrate. These results, along with bulk assays, depict nsp13 as an intrinsically weak helicase that can be activated >50-fold by piconewton forces. Such force-dependent behavior contrasts the known behavior of other viral monomeric helicases, such as hepatitis C virus NS3, and instead draws stronger parallels to ring-shaped helicases. Our findings suggest that mechanoregulation, which may be provided by a directly bound RNA-dependent RNA polymerase, enables on-demand helicase activity on the relevant polynucleotide substrate during viral replication.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / pharmacology
  • Biomechanical Phenomena
  • DNA, Viral / metabolism*
  • Methyltransferases / metabolism*
  • RNA Helicases / metabolism*
  • RNA, Viral / metabolism*
  • SARS-CoV-2 / enzymology*
  • Single Molecule Imaging
  • Viral Nonstructural Proteins / metabolism*

Substances

  • DNA, Viral
  • RNA, Viral
  • Viral Nonstructural Proteins
  • Adenosine Triphosphate
  • Methyltransferases
  • Nsp13 protein, SARS-CoV
  • RNA Helicases