Tet2 Inactivation Enhances the Antitumor Activity of Tumor-Infiltrating Lymphocytes

Cancer Res. 2021 Apr 15;81(8):1965-1976. doi: 10.1158/0008-5472.CAN-20-3213. Epub 2021 Feb 15.

Abstract

Inactivation of tumor-infiltrating lymphocytes (TIL) is one of the mechanisms mitigating antitumor immunity during tumor onset and progression. Epigenetic abnormalities are regarded as a major culprit contributing to the dysfunction of TILs within tumor microenvironments. In this study, we used a murine model of melanoma to discover that Tet2 inactivation significantly enhances the antitumor activity of TILs with an efficacy comparable to immune checkpoint inhibition imposed by anti-PD-L1 treatment. Single-cell RNA-sequencing analysis suggested that Tet2-deficient TILs exhibit effector-like features. Transcriptomic and ATAC-sequencing analysis showed that Tet2 ablation reshapes chromatin accessibility and favors binding of transcription factors geared toward CD8+ T-cell activation. Furthermore, the ETS family of transcription factors contributed to augmented CD8+ T-cell function following Tet2 depletion. Overall, our study establishes that Tet2 constitutes one of the epigenetic barriers that account for dysfunction of TILs and that Tet2 inactivation could promote antitumor immunity to suppress tumor growth. SIGNIFICANCE: This study suggests that ablation of TET2+ from TILs could promote their antitumor function by reshaping chromatin accessibility for key transcription factors and enhancing the transcription of genes essential for antitumor activity.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adoptive Transfer / methods
  • Animals
  • CD8-Positive T-Lymphocytes / immunology*
  • Chromatin / metabolism
  • DNA Demethylation
  • DNA-Binding Proteins / deficiency*
  • DNA-Binding Proteins / genetics
  • Dioxygenases
  • Disease Models, Animal
  • Epigenesis, Genetic
  • Gene Deletion
  • Gene Silencing
  • Immune Checkpoint Inhibitors / therapeutic use
  • Lymphocyte Activation / immunology*
  • Lymphocytes, Tumor-Infiltrating / immunology*
  • MAP Kinase Kinase Kinases
  • Melanoma, Experimental / immunology*
  • Melanoma, Experimental / metabolism
  • Melanoma, Experimental / therapy
  • Mice
  • Mice, Inbred C57BL
  • Ovalbumin / immunology
  • Perforin / metabolism
  • Proto-Oncogene Proteins / deficiency*
  • Proto-Oncogene Proteins / genetics
  • Sequence Analysis, RNA
  • Transcription Factors / metabolism
  • Tumor Microenvironment / immunology
  • Tumor Necrosis Factor-alpha / metabolism

Substances

  • Chromatin
  • DNA-Binding Proteins
  • Immune Checkpoint Inhibitors
  • Proto-Oncogene Proteins
  • Tnf protein, mouse
  • Transcription Factors
  • Tumor Necrosis Factor-alpha
  • perforin 1, mouse
  • Perforin
  • Ovalbumin
  • Dioxygenases
  • Tet2 protein, mouse
  • MAP Kinase Kinase Kinases
  • MAP3K8 protein, human