ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data

Microbiol Resour Announc. 2021 Mar 4;10(9):e01468-20. doi: 10.1128/MRA.01468-20.

Abstract

ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.