Proximal Single-Stranded RNA Destabilizes Human Telomerase RNA G-Quadruplex and Induces Its Distinct Conformers

J Phys Chem Lett. 2021 Apr 8;12(13):3361-3366. doi: 10.1021/acs.jpclett.1c00250. Epub 2021 Mar 30.

Abstract

Single-stranded guanine-rich RNA sequences have a propensity to fold into compact G-quadruplexes (RG4s). The conformational transitions of these molecules provide an important way to regulate their biological functions. Here, we examined the stability and conformation of an RG4-forming sequence identified near the end of human telomerase RNA. We found that a proximal single-stranded (ss) RNA significantly impairs RG4 stability at physiological K+ concentrations, resulting in a reduced RG4 rupture force of ∼ 24.4 pN and easier accessibility of the G-rich sequence. The destabilizing effect requires a minimum of six nucleotides of ssRNA and is effective at either end of RG4. Remarkably, this RG4-forming sequence, under the influence of such a proximal ssRNA, exhibits interconversions between at least three less stable RG4 conformers that might represent potential intermediates along its folding/unfolding pathway. This work provides insights into the stability and folding dynamics of RG4 that are essential for understanding its biological functions.

MeSH terms

  • Fluorescent Dyes / chemistry
  • G-Quadruplexes*
  • Humans
  • Ions / chemistry
  • Nucleic Acid Conformation
  • Potassium / chemistry
  • RNA / chemistry*
  • RNA / genetics
  • RNA Stability
  • Telomerase / chemistry*
  • Telomerase / genetics

Substances

  • Fluorescent Dyes
  • Ions
  • telomerase RNA
  • RNA
  • Telomerase
  • Potassium