Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinoma

Aging (Albany NY). 2021 Apr 21;13(8):11919-11941. doi: 10.18632/aging.202896. Epub 2021 Apr 21.

Abstract

M6A-related genes have been proven to play an important role in many cancers. However, the role of that in adrenocortical carcinoma (ACC) has not been fully elucidated. In the present study, 77 ACC samples from TCGA database were divided into localized (n = 46) and metastatic (n = 31) groups. Three differential expression genes (DEGs) and five prognostic m6A genes were screened out. M6A-related risk signature (RBM15 and HNRNPC) was constructed by the Lasso regression analysis. In TCGA cohort (training cohort), the risk signature was identified as an ACC-independent prognostic factor and can distinguish the prognostic difference of ACC patients with clinical stage I-II, T3-4 and N0 stages. A nomogram combining T stage and m6A risk score was constructed to predict the overall survival rate (OSR) of individual at 1,2,3 year. Meanwhile, its prognostic value was also confirmed in the validation cohort (GSE33371 dataset). The potential associations between m6A risk level and immune checkpoint inhibitors (ICIs) therapy were also investigated via the TISIDB online tool. High m6A risk not only can suppress immunotherapy-related biological processes, but also repress the expressions of immune-checkpoint markers. Moreover, five pairs of clinical specimens were collected to confirm the overexpression of HNRNPC and non-ectopic expression of RBM15 in tumor tissues. HNRNPC was proven to promote the proliferation, migration and invasion of H295R and SW13 cells through MTT and Transwell assays. In conclusion, the m6A-related risk signature was beneficial for prognostic analysis and can affect immune microenvironment in ACC. HNRNPC played a pro-cancer role in ACC progression.

Keywords: N6-methyladenosine; adrenocortical carcinoma; methylation; prognosis; risk signature.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Adenosine / analogs & derivatives
  • Adenosine / metabolism
  • Adrenal Cortex / immunology
  • Adrenal Cortex / pathology
  • Adrenal Cortex / surgery
  • Adrenal Cortex Neoplasms / diagnosis
  • Adrenal Cortex Neoplasms / genetics*
  • Adrenal Cortex Neoplasms / mortality
  • Adrenal Cortex Neoplasms / therapy
  • Adrenalectomy
  • Adrenocortical Carcinoma / diagnosis
  • Adrenocortical Carcinoma / genetics*
  • Adrenocortical Carcinoma / mortality
  • Adrenocortical Carcinoma / therapy
  • Aged
  • Biomarkers, Tumor / genetics*
  • Biomarkers, Tumor / metabolism
  • Cell Line, Tumor
  • Cell Proliferation / genetics
  • Computational Biology
  • Datasets as Topic
  • Disease Progression
  • Epigenesis, Genetic*
  • Female
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Heterogeneous-Nuclear Ribonucleoprotein Group C / genetics
  • Heterogeneous-Nuclear Ribonucleoprotein Group C / metabolism
  • Humans
  • Immune Checkpoint Inhibitors / therapeutic use
  • Male
  • Methylation
  • Middle Aged
  • Neoplasm Invasiveness / genetics
  • Neoplasm Invasiveness / immunology
  • Neoplasm Invasiveness / pathology
  • Neoplasm Staging
  • Nomograms*
  • RNA / metabolism
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Survival Analysis
  • Survival Rate
  • Tumor Microenvironment / genetics
  • Tumor Microenvironment / immunology

Substances

  • Biomarkers, Tumor
  • HNRNPC protein, human
  • Heterogeneous-Nuclear Ribonucleoprotein Group C
  • Immune Checkpoint Inhibitors
  • RBM15 protein, human
  • RNA-Binding Proteins
  • RNA
  • N-methyladenosine
  • Adenosine