Capturing the dynamic association between a tris-dipicolinate lanthanide complex and a decapeptide: a combined paramagnetic NMR and molecular dynamics exploration

Phys Chem Chem Phys. 2021 May 19;23(19):11224-11232. doi: 10.1039/d0cp06570f.

Abstract

In the realm of biomolecules, peptides can present a large diversity of structures. Our study sheds new light on the structural interplay between a tris-dipicolinate lanthanide probe and a decapeptide SASYKTLPRG. Although a rather trivial, electrostatically driven interaction was expected, the combination of paramagnetic NMR and molecular dynamics simulations reveals a highly dynamic association process and allows for providing extensive insights into the interaction sites and their occupancy. This study highlights the importance of a large conformational sampling to reconcile characteristic time in NMR with molecular dynamics simulations, where sampling in the microsecond range is needed. This study opens the door for a detailed mechanistic elucidation of the early steps of lanthanide complex-peptide or lanthanide complex-protein interaction or self-assembly processes.

MeSH terms

  • Coordination Complexes / chemistry*
  • Lanthanoid Series Elements / chemistry*
  • Magnetic Resonance Spectroscopy
  • Molecular Conformation
  • Molecular Dynamics Simulation
  • Picolinic Acids / chemistry*
  • Static Electricity

Substances

  • Coordination Complexes
  • Lanthanoid Series Elements
  • Picolinic Acids