The Role of N-myc Downstream-Regulated Gene Family in Glioma Based on Bioinformatics Analysis

DNA Cell Biol. 2021 Jul;40(7):949-968. doi: 10.1089/dna.2020.6216. Epub 2021 Jun 10.

Abstract

Glioma is the most common type of primary tumor in the central nervous system, and the molecular mechanisms remain elusive. N-myc downstream-regulated gene (NDRG) family is reported to take part in the pathogenesis of various diseases, including some preliminary exploration in glioma. However, there has been no bioinformatics analysis of NDRG family in glioma yet. Herein, we focused on the expression changes of NDRGs with their value in predicting patients' prognoses, upstream regulatory mechanisms (DNA mutation, DNA methylation, transcription factors, and microRNA regulation) and gene enrichment analysis based on co-expressed genes with data from public databases. Furthermore, the expression pattern of NDRGs was verified by the paired glioma and peritumoral samples in our institute. It was suggested that NDRGs were differentially expressed genes in glioma. In particular, the lower expression of NDRG2 or NDRG4 could serve as a predictor of higher grade tumor and poorer prognosis. Also, NDRGs might play a crucial role in signal transduction, energy metabolism, and cross-talk among cells in glioma, under the control of a complex regulatory network. This study enables us to better understand the role of NDRGs in glioma and with further research, it may contribute to the development of glioma treatment.

Keywords: CGGA; N-myc downstream-regulated gene; TCGA; bioinformatics analysis; glioma.

MeSH terms

  • Brain Neoplasms / pathology
  • Cell Cycle Proteins / genetics
  • China
  • Computational Biology / methods
  • Databases, Genetic
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Neoplastic / genetics
  • Glioma / genetics*
  • Glioma / metabolism
  • Humans
  • Intracellular Signaling Peptides and Proteins / genetics
  • Muscle Proteins / genetics
  • Muscle Proteins / metabolism
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism
  • Prognosis
  • Transcription Factors / genetics
  • Tumor Suppressor Proteins / genetics*
  • Tumor Suppressor Proteins / metabolism

Substances

  • Cell Cycle Proteins
  • Intracellular Signaling Peptides and Proteins
  • Muscle Proteins
  • N-myc downstream-regulated gene 1 protein
  • NDRG2 protein, human
  • NDRG3 protein, human
  • NDRG4 protein, human
  • Nerve Tissue Proteins
  • Transcription Factors
  • Tumor Suppressor Proteins