CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice

J Integr Plant Biol. 2021 Oct;63(10):1724-1739. doi: 10.1111/jipb.13147. Epub 2021 Aug 5.

Abstract

Pentatricopeptide repeat (PPR) proteins play important roles in the post-transcriptional modification of organellar RNAs in plants. However, the function of most PPR proteins remains unknown. Here, we characterized the rice (Oryza sativa L.) chlorophyll deficient 4 (cde4) mutant which exhibits an albino phenotype during early leaf development, with decreased chlorophyll contents and abnormal chloroplasts at low-temperature (20°C). Positional cloning revealed that CDE4 encodes a P-type PPR protein localized in chloroplasts. In the cde4 mutant, plastid-encoded polymerase (PEP)-dependent transcript levels were significantly reduced, but transcript levels of nuclear-encoded genes were increased compared to wild-type plants at 20°C. CDE4 directly binds to the transcripts of the chloroplast genes rpl2, ndhA, and ndhB. Intron splicing of these transcripts was defective in the cde4 mutant at 20°C, but was normal at 32°C. Moreover, CDE4 interacts with the guanylate kinase VIRESCENT 2 (V2); overexpression of V2 enhanced CDE4 protein stability, thereby rescuing the cde4 phenotype at 20°C. Our results suggest that CDE4 participates in plastid RNA splicing and plays an important role in rice chloroplast development under low-temperature conditions.

Keywords: CDE4; Oryza sativa L.; RNA splicing; chloroplast development; low-temperature; pentatricopeptide repeat (PPR) protein.

MeSH terms

  • Arabidopsis Proteins
  • Chlorophyll / metabolism
  • Chloroplasts / physiology*
  • Guanylate Kinases / metabolism
  • Oryza / genetics*
  • Oryza / metabolism
  • Plant Development
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • RNA Splicing*
  • RNA, Chloroplast / metabolism*
  • Temperature

Substances

  • Arabidopsis Proteins
  • Plant Proteins
  • RNA, Chloroplast
  • pentatricopeptide repeat protein, Arabidopsis
  • Chlorophyll
  • Guanylate Kinases