Single-cell transcriptomics of suprachiasmatic nuclei reveal a Prokineticin-driven circadian network

EMBO J. 2021 Oct 18;40(20):e108614. doi: 10.15252/embj.2021108614. Epub 2021 Sep 6.

Abstract

Circadian rhythms in mammals are governed by the hypothalamic suprachiasmatic nucleus (SCN), in which 20,000 clock cells are connected together into a powerful time-keeping network. In the absence of network-level cellular interactions, the SCN fails as a clock. The topology and specific roles of its distinct cell populations (nodes) that direct network functions are, however, not understood. To characterise its component cells and network structure, we conducted single-cell sequencing of SCN organotypic slices and identified eleven distinct neuronal sub-populations across circadian day and night. We defined neuropeptidergic signalling axes between these nodes, and built neuropeptide-specific network topologies. This revealed their temporal plasticity, being up-regulated in circadian day. Through intersectional genetics and real-time imaging, we interrogated the contribution of the Prok2-ProkR2 neuropeptidergic axis to network-wide time-keeping. We showed that Prok2-ProkR2 signalling acts as a key regulator of SCN period and rhythmicity and contributes to defining the network-level properties that underpin robust circadian co-ordination. These results highlight the diverse and distinct contributions of neuropeptide-modulated communication of temporal information across the SCN.

Keywords: Prokineticin receptor 2; Prokineticin2; neural network; neuropeptides; single-cell transcriptomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Circadian Clocks / genetics*
  • Circadian Rhythm / genetics*
  • Gastrin-Releasing Peptide / genetics
  • Gastrin-Releasing Peptide / metabolism
  • Gastrointestinal Hormones / genetics*
  • Gastrointestinal Hormones / metabolism
  • Gene Expression Regulation
  • Gene Regulatory Networks
  • Mice
  • Neurons / cytology
  • Neurons / metabolism
  • Neuropeptides / genetics*
  • Neuropeptides / metabolism
  • Receptors, Bombesin / genetics
  • Receptors, Bombesin / metabolism
  • Receptors, G-Protein-Coupled / genetics*
  • Receptors, G-Protein-Coupled / metabolism
  • Receptors, Peptide / genetics*
  • Receptors, Peptide / metabolism
  • Receptors, Vasopressin / genetics
  • Receptors, Vasopressin / metabolism
  • Signal Transduction
  • Single-Cell Analysis
  • Suprachiasmatic Nucleus / cytology
  • Suprachiasmatic Nucleus / metabolism*
  • Transcriptome*
  • Vasoactive Intestinal Peptide / genetics
  • Vasoactive Intestinal Peptide / metabolism
  • Vasopressins / genetics
  • Vasopressins / metabolism

Substances

  • AVPR1a receptor, mouse
  • Gastrointestinal Hormones
  • Grp protein, mouse
  • Neuropeptides
  • Prok2 protein, mouse
  • Prokr2 protein, mouse
  • Receptors, Bombesin
  • Receptors, G-Protein-Coupled
  • Receptors, Peptide
  • Receptors, Vasopressin
  • Vasopressins
  • Vasoactive Intestinal Peptide
  • Gastrin-Releasing Peptide