Agromyces mariniharenae sp. nov., a novel indole-acetic acid producing actinobacterium isolated from marine sand

Int J Syst Evol Microbiol. 2021 Sep;71(9). doi: 10.1099/ijsem.0.005026.

Abstract

A Gram-positive, aerobic, heterotrophic, non-endospore-forming, rod-shaped and indole-acetic acid-producing strain, designated NEAU-184T, was isolated from marine sand collected in Sanya, PR China, and its taxonomic position was investigated using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain NEAU-184T should be assigned to the genus Agromyces and formed a distinct branch with its closest neighbour, Agromyces iriomotensis NBRC 106452T (99.1 %). 2,4-Diaminobutyric acid, d-alanine, d-glutamic acid and glycine were detected in cell-wall hydrolysate and glucose, rhamnose and xylose were detected in whole-cell hydrolysate. The polar lipids were found to contain diphosphatidylglycerol, glycolipid, phosphatidylglycerol and two unidentified lipids. The major menaquinone was MK-12 and the minor menaquinones were MK-13 and MK-11. The predominant fatty acids were anteiso-C17 : 0, anteiso-C15 : 0 and iso-C16 : 0. The DNA G+C content was 71.5 mol%. Furthermore, the strain could be clearly distinguished from its closely related type strains by the combination of DNA-DNA hybridization results and some phenotypic characteristics. Meanwhile, the strain has the ability to produce indole-acetic acid (0.334mg ml-1). Therefore, strain NEAU-184T represents a novel species of the genus Agromyces, for which the name Agromyces mariniharenae sp. nov. is proposed, with strain NEAU-184T (=CGMCC 4.7505T=JCM 32546T) as the type strain.

Keywords: Agromyces mariniharenae sp. nov.; indole-acetic acid; polyphasic approach; whole genome analysis.

MeSH terms

  • Acetates
  • Actinobacteria
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids* / chemistry
  • Indoles
  • Phospholipids
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sand*
  • Sequence Analysis, DNA
  • Vitamin K 2

Substances

  • Acetates
  • DNA, Bacterial
  • Fatty Acids
  • Indoles
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Sand
  • Vitamin K 2

Supplementary concepts

  • Agromyces iriomotensis