Miniature type V-F CRISPR-Cas nucleases enable targeted DNA modification in cells

Nat Commun. 2021 Oct 26;12(1):6191. doi: 10.1038/s41467-021-26469-4.

Abstract

Class 2 CRISPR systems are exceptionally diverse, nevertheless, all share a single effector protein that contains a conserved RuvC-like nuclease domain. Interestingly, the size of these CRISPR-associated (Cas) nucleases ranges from >1000 amino acids (aa) for Cas9/Cas12a to as small as 400-600 aa for Cas12f. For in vivo genome editing applications, compact RNA-guided nucleases are desirable and would streamline cellular delivery approaches. Although miniature Cas12f effectors have been shown to cleave double-stranded DNA, targeted DNA modification in eukaryotic cells has yet to be demonstrated. Here, we biochemically characterize two miniature type V-F Cas nucleases, SpCas12f1 (497 aa) and AsCas12f1 (422 aa), and show that SpCas12f1 functions in both plant and human cells to produce targeted modifications with outcomes in plants being enhanced with short heat pulses. Our findings pave the way for the development of miniature Cas12f1-based genome editing tools.

MeSH terms

  • Bacillales / enzymology
  • CRISPR-Associated Proteins / chemistry
  • CRISPR-Associated Proteins / metabolism*
  • CRISPR-Cas Systems
  • Clostridiales / enzymology
  • DNA / metabolism*
  • Endodeoxyribonucleases / chemistry
  • Endodeoxyribonucleases / metabolism*
  • Gene Editing*
  • HEK293 Cells
  • Humans
  • Plant Cells
  • Protein Multimerization
  • RNA, Guide, CRISPR-Cas Systems / genetics
  • RNA, Guide, CRISPR-Cas Systems / metabolism
  • Ribonucleoproteins / chemistry
  • Ribonucleoproteins / metabolism
  • Zea mays

Substances

  • CRISPR-Associated Proteins
  • RNA, Guide, CRISPR-Cas Systems
  • Ribonucleoproteins
  • DNA
  • Endodeoxyribonucleases

Supplementary concepts

  • Acidibacillus sulfuroxidans
  • Syntrophomonas palmitatica