New Role for Radical SAM Enzymes in the Biosynthesis of Thio(seleno)oxazole RiPP Natural Products

Biochemistry. 2021 Nov 16;60(45):3347-3361. doi: 10.1021/acs.biochem.1c00469. Epub 2021 Nov 3.

Abstract

Ribosomally synthesized post-translationally modified peptides (RiPPs) are ubiquitous and represent a structurally diverse class of natural products. The ribosomally encoded precursor polypeptides are often extensively modified post-translationally by enzymes that are encoded by coclustered genes. Radical S-adenosyl-l-methionine (SAM) enzymes catalyze numerous chemically challenging transformations. In RiPP biosynthetic pathways, these transformations include the formation of C-H, C-C, C-S, and C-O linkages. In this paper, we show that the Geobacter lovleyi sbtM gene encodes a radical SAM protein, SbtM, which catalyzes the cyclization of a Cys/SeCys residue in a minimal peptide substrate. Biochemical studies of this transformation support a mechanism involving H-atom abstraction at the C-3 of the substrate Cys to initiate the chemistry. Several possible cyclization products were considered. The collective biochemical, spectroscopic, mass spectral, and computational observations point to a thiooxazole as the product of the SbtM-catalyzed modification. To our knowledge, this is the first example of a radical SAM enzyme that catalyzes a transformation involving a SeCys-containing peptide and represents a new paradigm for formation of oxazole-containing RiPP natural products.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Antimicrobial Cationic Peptides / metabolism
  • Antimicrobial Cationic Peptides / physiology
  • Antimicrobial Peptides / metabolism*
  • Antimicrobial Peptides / physiology
  • Biological Products / metabolism
  • Catalysis
  • Geobacter / metabolism*
  • Geobacter / pathogenicity
  • Mass Spectrometry / methods
  • Oxazoles
  • Protein Processing, Post-Translational / physiology
  • Proteomics / methods
  • Ribosomes
  • S-Adenosylmethionine / chemistry*
  • S-Adenosylmethionine / metabolism

Substances

  • Antimicrobial Cationic Peptides
  • Antimicrobial Peptides
  • Biological Products
  • Oxazoles
  • S-Adenosylmethionine

Supplementary concepts

  • Geobacter lovleyi