Distribution and genome structures of temperate phages in acetic acid bacteria

Sci Rep. 2021 Nov 3;11(1):21567. doi: 10.1038/s41598-021-00998-w.

Abstract

Acetic acid bacteria (AAB) are industrial microorganisms used for vinegar fermentation. Herein, we investigated the distribution and genome structures of mitomycin C-inducible temperate phages in AAB. Transmission electron microscopy analysis revealed phage-like particles in 15 out of a total 177 acetic acid bacterial strains, all of which showed morphology similar to myoviridae-type phage. The complete genome sequences of the six phages derived from three strains each of Acetobacter and Komagataeibacter strains were determined, harboring a genome size ranging from 34,100 to 53,798 bp. A phage AP1 from A. pasteurianus NBRC 109446 was predicted as an active phage based on the genomic information, and actually had the ability to infect its phiAP1-cured strain. The attachment sites for phiAP1 were located in the 3'-end region of the tRNAser gene. We also developed a chromosome-integrative vector, p2096int, based on the integrase function of phiAP1, and it was successfully integrated into the attachment site of the phiAP1-cured strain, which may be used as a valuable tool for the genetic engineering. Overall, this study showed the distribution of mitomycin C-inducible temperate phages in AAB, and identified the active temperate phage o f A. pasteurianus.

MeSH terms

  • Acetic Acid / chemistry*
  • Acetobacter
  • Acetobacteraceae
  • Ampicillin
  • Bacteria / genetics*
  • Bacteriophages
  • Cluster Analysis
  • Computational Biology
  • Fermentation
  • Genetic Engineering
  • Genome, Bacterial
  • Genomics
  • Microscopy, Electron, Transmission
  • Mitomycin / chemistry*
  • Myoviridae
  • Open Reading Frames
  • Phylogeny
  • Plasmids / metabolism
  • Saccharomycetales
  • Temperature

Substances

  • Mitomycin
  • Ampicillin
  • Acetic Acid