Cryo-EM structure provides insights into the dimer arrangement of the O-linked β-N-acetylglucosamine transferase OGT

Nat Commun. 2021 Nov 11;12(1):6508. doi: 10.1038/s41467-021-26796-6.

Abstract

The O-linked β-N-acetylglucosamine modification is a core signalling mechanism, with erroneous patterns leading to cancer and neurodegeneration. Although thousands of proteins are subject to this modification, only a single essential glycosyltransferase catalyses its installation, the O-GlcNAc transferase, OGT. Previous studies have provided truncated structures of OGT through X-ray crystallography, but the full-length protein has never been observed. Here, we report a 5.3 Å cryo-EM model of OGT. We show OGT is a dimer, providing a structural basis for how some X-linked intellectual disability mutations at the interface may contribute to disease. We observe that the catalytic section of OGT abuts a 13.5 tetratricopeptide repeat unit region and find the relative positioning of these sections deviate from the previously proposed, X-ray crystallography-based model. We also note that OGT exhibits considerable heterogeneity in tetratricopeptide repeat units N-terminal to the dimer interface with repercussions for how OGT binds protein ligands and partners.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemistry
  • Amino Acids / metabolism*
  • Chromium / chemistry
  • Chromium / metabolism*
  • Cryoelectron Microscopy / methods*
  • Crystallography, X-Ray
  • Glycomics
  • Mutation / genetics
  • Nicotinic Acids / chemistry
  • Nicotinic Acids / metabolism*
  • Protein Structure, Secondary

Substances

  • Amino Acids
  • Nicotinic Acids
  • glucose tolerance factor
  • Chromium