Structural and Functional Characterization of a Biliverdin-Binding Near-Infrared Fluorescent Protein From the Serpin Superfamily

J Mol Biol. 2022 Jan 30;434(2):167359. doi: 10.1016/j.jmb.2021.167359. Epub 2021 Nov 16.

Abstract

Biliverdin-binding serpins (BBSs) are proteins that are responsible for coloration in amphibians and fluoresce in the near-infrared (NIR) spectral region. Here we produced the first functional recombinant BBS of the polka-dot treefrog Boana punctata (BpBBS), assembled with its biliverdin (BV) chromophore, and report its biochemical and photochemical characterization. We determined the crystal structure of BpBBS at 2.05 Å resolution, which demonstrated its structural homology to the mammalian protease inhibitor alpha-1-antitrypsin. BV interaction with BpBBS was studied and it was found that the N-terminal polypeptide (residues 19-50) plays a critical role in the BV binding. By comparing BpBBS with the available NIR fluorescent proteins and expressing it in mammalian cells, we demonstrated its potential as a NIR imaging probe. These results provide insight into the non-inhibitory function of serpins, provide a basis for improving their performance in mammalian cells, and suggest possible paths for the development of BBS-based fluorescent probes.

Keywords: biliprotein; fluorescent protein; iRFP; phytochrome; tetrapyrrole.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacterial Proteins / chemistry
  • Biliverdine / chemistry*
  • Biliverdine / metabolism*
  • Fluorescent Dyes / chemistry
  • HeLa Cells
  • Humans
  • Luminescent Proteins / chemistry
  • Luminescent Proteins / metabolism
  • Phytochrome / chemistry
  • Serpins / chemistry*
  • Serpins / metabolism*
  • Tetrapyrroles / chemistry

Substances

  • Bacterial Proteins
  • Fluorescent Dyes
  • Luminescent Proteins
  • Serpins
  • Tetrapyrroles
  • Phytochrome
  • Biliverdine