Reprogramming microbial populations using a programmed lysis system to improve chemical production

Nat Commun. 2021 Nov 25;12(1):6886. doi: 10.1038/s41467-021-27226-3.

Abstract

Microbial populations are a promising model for achieving microbial cooperation to produce valuable chemicals. However, regulating the phenotypic structure of microbial populations remains challenging. In this study, a programmed lysis system (PLS) is developed to reprogram microbial cooperation to enhance chemical production. First, a colicin M -based lysis unit is constructed to lyse Escherichia coli. Then, a programmed switch, based on proteases, is designed to regulate the effective lysis unit time. Next, a PLS is constructed for chemical production by combining the lysis unit with a programmed switch. As a result, poly (lactate-co-3-hydroxybutyrate) production is switched from PLH synthesis to PLH release, and the content of free PLH is increased by 283%. Furthermore, butyrate production with E. coli consortia is switched from E. coli BUT003 to E. coli BUT004, thereby increasing butyrate production to 41.61 g/L. These results indicate the applicability of engineered microbial populations for improving the metabolic division of labor to increase the efficiency of microbial cell factories.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriolysis / genetics*
  • Butyrates / metabolism
  • Colicins / genetics
  • Colicins / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli / physiology
  • Metabolic Engineering / methods*
  • Microbial Consortia / genetics*
  • Peptide Hydrolases / genetics
  • Peptide Hydrolases / metabolism
  • Polyesters / metabolism
  • Protein Sorting Signals / genetics
  • Synthetic Biology

Substances

  • Butyrates
  • Colicins
  • Polyesters
  • Protein Sorting Signals
  • poly(lactate-co-3-hydroxybutyrate)
  • Peptide Hydrolases