Yme2, a putative RNA recognition motif and AAA+ domain containing protein, genetically interacts with the mitochondrial protein export machinery

Biol Chem. 2022 Jan 31;403(8-9):807-817. doi: 10.1515/hsz-2021-0398. Print 2022 Jul 26.

Abstract

The mitochondrial respiratory chain is composed of nuclear as well as mitochondrial-encoded subunits. A variety of factors mediate co-translational integration of mtDNA-encoded proteins into the inner membrane. In Saccharomyces cerevisiae, Mdm38 and Mba1 are ribosome acceptors that recruit the mitochondrial ribosome to the inner membrane, where the insertase Oxa1, facilitates membrane integration of client proteins. The protein Yme2 has previously been shown to be localized in the inner mitochondrial membrane and has been implicated in mitochondrial protein biogenesis, but its mode of action remains unclear. Here, we show that multiple copies of Yme2 assemble into a high molecular weight complex. Using a combination of bioinformatics and mutational analyses, we find that Yme2 possesses an RNA recognition motif (RRM), which faces the mitochondrial matrix and a AAA+ domain that is located in the intermembrane space. We further show that YME2 genetically interacts with MDM38, MBA1 and OXA1, which links the function of Yme2 to the mitochondrial protein biogenesis machinery.

Keywords: MBA1; MDM38; OXA1; RRM; Walker motifs; mitoribosome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • AAA Domain
  • Electron Transport Complex IV / metabolism
  • Membrane Proteins / metabolism
  • Mitochondrial Proteins* / genetics
  • Mitochondrial Proteins* / metabolism
  • Nuclear Proteins / metabolism
  • RNA Recognition Motif
  • Saccharomyces cerevisiae Proteins* / genetics
  • Saccharomyces cerevisiae Proteins* / metabolism
  • Saccharomyces cerevisiae* / genetics
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Electron Transport Complex IV
  • MBA1 protein, S cerevisiae
  • Membrane Proteins
  • Mitochondrial Proteins
  • Nuclear Proteins
  • Saccharomyces cerevisiae Proteins
  • YME2 protein, S cerevisiae