Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77

Acta Crystallogr F Struct Biol Commun. 2022 Feb 1;78(Pt 2):66-74. doi: 10.1107/S2053230X22000188. Epub 2022 Jan 27.

Abstract

Hydrogenases catalyze the reversible oxidation of H2. Carbon monoxide (CO) is known to be a competitive inhibitor of O2-sensitive [NiFe]-hydrogenases. Although the activities of some O2-tolerant [NiFe]-hydrogenases are unaffected by CO, the partially O2-tolerant [NiFe]-hydrogenase from Citrobacter sp. S-77 (S77-HYB) is inhibited by CO. In this work, the CO-bound state of S77-HYB was characterized by activity assays, spectroscopic techniques and X-ray crystallography. Electron paramagnetic resonance spectroscopy showed a diamagnetic Ni2+ state, and Fourier-transform infrared spectroscopy revealed the stretching vibration of the exogenous CO ligand. The crystal structure determined at 1.77 Å resolution revealed that CO binds weakly to the nickel ion in the Ni-Fe active site of S77-HYB. These results suggest a positive correlation between O2 and CO tolerance in [NiFe]-hydrogenases.

Keywords: Citrobacter sp. S-77; [NiFe]-hydrogenases; carbon monoxide; crystal structure; inhibitors; spectroscopy.

MeSH terms

  • Bacterial Proteins / chemistry
  • Carbon Monoxide / chemistry*
  • Carbon Monoxide / metabolism
  • Carbon Monoxide / pharmacology
  • Catalytic Domain
  • Citrobacter / enzymology*
  • Crystallography, X-Ray
  • Electron Spin Resonance Spectroscopy
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / metabolism
  • Enzyme Inhibitors / pharmacology
  • Hydrogenase / antagonists & inhibitors*
  • Hydrogenase / chemistry*
  • Hydrogenase / metabolism
  • Models, Molecular
  • Protein Conformation
  • Spectroscopy, Fourier Transform Infrared

Substances

  • Bacterial Proteins
  • Enzyme Inhibitors
  • Carbon Monoxide
  • nickel-iron hydrogenase
  • Hydrogenase