rtcisE2F promotes the self-renewal and metastasis of liver tumor-initiating cells via N6-methyladenosine-dependent E2F3/E2F6 mRNA stability

Sci China Life Sci. 2022 Sep;65(9):1840-1854. doi: 10.1007/s11427-021-2038-5. Epub 2022 Mar 3.

Abstract

Liver cancer is highly heterogeneous, and the tumor tissue harbors a variety of cell types. Liver tumor initiating cells (TICs) well contribute to tumor heterogeneity and account for tumor initiation and metastasis, but the molecular mechanisms of liver TIC self-renewal are elusive. Here, we identified a functional read-through rt-circRNA, termed rtcisE2F, that is highly expressed in liver cancer and liver TICs. rtcisE2F plays essential roles in the self-renewal and activities of liver TICs. rtcisE2F targets E2F6 and E2F3 mRNAs, attenuates mRNA turnover, and increases E2F6/E2F3 expression. Mechanistically, rtcisE2F functions as a scaffold of N-methyladenosine (m6A) reader IGF2BP2 and E2F6/E2F3 mRNA. rtcisE2F promotes the association of E2F6/E2F3 mRNAs with IGF2BP2, and inhibits their association with another m6A reader, YTHDF2. IGF2BP2 inhibits E2F6/E2F3 mRNA decay, whereas YTHDF2 promotes E2F6/E2F3 mRNA decay. By switching m6A readers, rtcisE2F enhances E2F6/E2F3 mRNA stability. E2F6 and E2F3 are both required for liver TIC self-renewal and Wnt/β-catenin activation, and inhibition of these pathways is a potential strategy for preventing liver tumorigenesis and metastasis. In conclusion, the rtcisE2F-IGF2BP2/YTHDF2-E2F6/E2F3-Wnt/β-catenin axis drives liver TIC self-renewal and initiates liver tumorigenesis and metastasis, and may provide a strategy to eliminate liver TICs.

Keywords: N 6-methyladenosine; circular RNA; metastasis; self-renewal; tumor-initiating cells.

MeSH terms

  • Adenosine / analogs & derivatives
  • Carcinogenesis / metabolism
  • Cell Line, Tumor
  • E2F3 Transcription Factor
  • E2F6 Transcription Factor / genetics
  • E2F6 Transcription Factor / metabolism
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Liver Neoplasms* / metabolism
  • Neoplastic Stem Cells / metabolism
  • RNA Stability
  • RNA, Long Noncoding* / genetics
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Transcription Factors / metabolism
  • beta Catenin / genetics
  • beta Catenin / metabolism

Substances

  • E2F3 Transcription Factor
  • E2F3 protein, human
  • E2F6 Transcription Factor
  • E2F6 protein, human
  • IGF2BP2 protein, human
  • RNA, Long Noncoding
  • RNA, Messenger
  • RNA-Binding Proteins
  • Transcription Factors
  • beta Catenin
  • N-methyladenosine
  • Adenosine