Genome-wide association study of actinic keratosis identifies new susceptibility loci implicated in pigmentation and immune regulation pathways

Commun Biol. 2022 Apr 21;5(1):386. doi: 10.1038/s42003-022-03301-3.

Abstract

Actinic keratosis (AK) is a common precancerous cutaneous neoplasm that arises on chronically sun-exposed skin. AK susceptibility has a moderate genetic component, and although a few susceptibility loci have been identified, including IRF4, TYR, and MC1R, additional loci have yet to be discovered. We conducted a genome-wide association study of AK in non-Hispanic white participants of the Genetic Epidemiology Research on Adult Health and Aging (GERA) cohort (n = 63,110, discovery cohort), with validation in the Mass-General Brigham (MGB) Biobank cohort (n = 29,130). We identified eleven loci (P < 5 × 10-8), including seven novel loci, of which four novel loci were validated. In a meta-analysis (GERA + MGB), one additional novel locus, TRPS1, was identified. Genes within the identified loci are implicated in pigmentation (SLC45A2, IRF4, BNC2, TYR, DEF8, RALY, HERC2, and TRPS1), immune regulation (FOXP1 and HLA-DQA1), and cell signaling and tissue remodeling (MMP24) pathways. Our findings provide novel insight into the genetics and pathogenesis of AK susceptibility.

Publication types

  • Meta-Analysis
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Forkhead Transcription Factors / genetics
  • Genetic Predisposition to Disease
  • Genome-Wide Association Study
  • Heterogeneous-Nuclear Ribonucleoprotein Group C / genetics
  • Humans
  • Keratosis, Actinic* / genetics
  • Polymorphism, Single Nucleotide
  • Repressor Proteins / genetics
  • Skin Neoplasms* / genetics

Substances

  • FOXP1 protein, human
  • Forkhead Transcription Factors
  • Heterogeneous-Nuclear Ribonucleoprotein Group C
  • RALY protein, human
  • Repressor Proteins
  • TRPS1 protein, human