New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière's Disease

Genes (Basel). 2022 Jun 1;13(6):998. doi: 10.3390/genes13060998.

Abstract

The objective was to study the genetic etiology of Ménière's disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population databases were used to estimate the frequency and pathogenicity of the variants. Variants were validated and genotyped from additional family members using capillary sequencing. A geneMANIA analysis was conducted to investigate the functional pathways and protein interactions of candidate genes. Seven rare variants were identified to co-segregate with MD in the three families: one variant in the CYP2B6 gene in family I, one variant in GUSB and EPB42 in family II, and one variant in each of the SLC6A, ASPM, KNTC1, and OVCH1 genes in family III. Four of these genes were linked to the same co-expression network with previous familial MD candidate genes. Dysfunction of CYP2B6 and SLC6A could predispose to MD via the oxidative stress pathway. Identification of ASPM and KNTC1 as candidate genes for MD suggests dysregulation of mitotic spindle formation in familial MD. The genetic etiology of familial MD is heterogenic. Our findings suggest a role for genes acting on oxidative stress and mitotic spindle formation in MD but also highlight the genetic complexity of MD.

Keywords: Ménière’s disease; genetics; whole exome sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cytochrome P-450 CYP2B6* / genetics
  • Exome Sequencing
  • GABA Plasma Membrane Transport Proteins* / genetics
  • Humans
  • Meniere Disease* / genetics
  • Nerve Tissue Proteins / genetics
  • Oxidative Stress / genetics

Substances

  • GABA Plasma Membrane Transport Proteins
  • Nerve Tissue Proteins
  • SLC6A1 protein, human
  • CYP2B6 protein, human
  • Cytochrome P-450 CYP2B6

Grants and funding

This study was supported by grants from the Finnish Foundation for Ear Diseases and the Emil Aaltonen Foundation.