Construction of a serum diagnostic signature based on m5C-related miRNAs for cancer detection

Front Endocrinol (Lausanne). 2023 Jan 27:14:1099703. doi: 10.3389/fendo.2023.1099703. eCollection 2023.

Abstract

Currently, no clinically relevant non-invasive biomarkers are available for screening of multiple cancer types. In this study, we developed a serum diagnostic signature based on 5-methylcytosine (m5C)-related miRNAs (m5C-miRNAs) for multiple-cancer detection. Serum miRNA expression data and the corresponding clinical information of patients were collected from the Gene Expression Omnibus database. Serum samples were then randomly assigned to the training or validation cohort at a 1:1 ratio. Using the identified m5C-miRNAs, an m5C-miRNA signature for cancer detection was established using a support vector machine algorithm. The constructed m5C-miRNA signature displayed excellent accuracy, and its areas under the curve were 0.977, 0.934, and 0.965 in the training cohort, validation cohort, and combined training and validation cohort, respectively. Moreover, the diagnostic capability of the m5C-miRNA signature was unaffected by patient age or sex or the presence of noncancerous disease. The m5C-miRNA signature also displayed satisfactory performance for distinguishing tumor types. Importantly, in the detection of early-stage cancers, the diagnostic performance of the m5C-miRNA signature was obviously superior to that of conventional tumor biomarkers. In summary, this work revealed the value of serum m5C-miRNAs in cancer detection and provided a new strategy for developing non-invasive and cost effective tools for large-scale cancer screening.

Keywords: diagnosis; liquid biopsy; m5C; pan-cancer; serum miRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers, Tumor / genetics
  • Early Detection of Cancer
  • Humans
  • MicroRNAs* / genetics
  • Neoplasms* / diagnosis
  • Neoplasms* / genetics
  • Serum

Substances

  • MicroRNAs
  • Biomarkers, Tumor

Grants and funding

This work was supported by the National Natural Science Foundation of China [under Grant number 31860244, 31760264, 32100442, 31960139, and 32260234]; the Science and Technology Foundation of Guizhou Province [under Grant (2020) 1Z016(2019)1275 (2021)172, ZK(2021)025, (2021)431, (2020)1Y087, and 19NSP002]; Excellent Young Talents Plan of Guizhou Medical University [under Grant 2020(105)].