Binding stoichiometry of tRNATrp and tryptophanyl-tRNA synthetase from bovine pancreas under pH conditions of maximum activity. Analysis by ultracentrifugation, fluorescence quenching and chemical modification

Biochim Biophys Acta. 1987 Dec 18;916(3):350-7. doi: 10.1016/0167-4838(87)90180-4.

Abstract

The binding stoichiometry of tRNATrp and tryptophanyl-tRNA synthetase (EC 6.1.1.2) from beef is examined by three approaches, under pH conditions of maximum activity (pH 8.0). (1) Analytical ultracentrifugation evidences the binding of a single mol of tRNATrp in a 2.5-10 microM concentration range. (2) tRNATrp quenches the fluorescence of the enzyme. The dependence of this fluorescence quenching on the tRNATrp concentration (0.1-4 microM) reflects also the binding of 1 mol of tRNA per mol of enzyme, with a Kd value of 0.19 +/- 0.02 microM. (3) tRNATrp protects the enzyme against derivatization by oxidized ATP. Out of the two fast-reacting lysine residues of the native enzyme, only one is prevented from reacting by tRNATrp in the 0.5-110 microM concentration range. This protection can be significantly analyzed only by assuming a one-to-one complex between the enzyme and tRNA. These results, obtained at pH 8.0 and 25 degrees C, are in contrast with the stoichiometry of 2 mol of tRNA to 1 mol of enzyme, previously observed at pH 6.0 and 4 degrees C.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acyl-tRNA Synthetases / metabolism*
  • Animals
  • Cattle
  • Hydrogen-Ion Concentration
  • Liver / analysis
  • RNA, Transfer, Amino Acid-Specific / metabolism*
  • RNA, Transfer, Trp / metabolism*
  • Tryptophan-tRNA Ligase / metabolism*
  • Ultracentrifugation

Substances

  • RNA, Transfer, Amino Acid-Specific
  • RNA, Transfer, Trp
  • Amino Acyl-tRNA Synthetases
  • Tryptophan-tRNA Ligase