AlphaFold, allosteric, and orthosteric drug discovery: Ways forward

Drug Discov Today. 2023 Jun;28(6):103551. doi: 10.1016/j.drudis.2023.103551. Epub 2023 Mar 11.

Abstract

Drug discovery is arguably a highly challenging and significant interdisciplinary aim. The stunning success of the artificial intelligence-powered AlphaFold, whose latest version is buttressed by an innovative machine-learning approach that integrates physical and biological knowledge about protein structures, raised drug discovery hopes that unsurprisingly, have not come to bear. Even though accurate, the models are rigid, including the drug pockets. AlphaFold's mixed performance poses the question of how its power can be harnessed in drug discovery. Here we discuss possible ways of going forward wielding its strengths, while bearing in mind what AlphaFold can and cannot do. For kinases and receptors, an input enriched in active (ON) state models can better AlphaFold's chance of rational drug design success.

Keywords: ESMfold; activating mutations; artificial intelligence; inhibitors; machine learning; orthosteric drugs.

Publication types

  • Review
  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • Allosteric Regulation
  • Allosteric Site
  • Artificial Intelligence*
  • Drug Design
  • Drug Discovery*
  • Proteins / chemistry

Substances

  • Proteins