Chemical probes for investigating protein liquid-liquid phase separation and aggregation

Curr Opin Chem Biol. 2023 Jun:74:102291. doi: 10.1016/j.cbpa.2023.102291. Epub 2023 Mar 31.

Abstract

Protein liquid-liquid phase separation drives the dynamic assembly of membraneless organelles for fulfilling different physiological functions. Under diseased condition, protein may undergo liquid-to-solid condensation to form pathological amyloid aggregates closely associated with neurodegenerative diseases. Chemical probe serves as an important chemical tool not only for exploring the basic principle of the dynamic assembly of different protein condensates in vitro and in cell but also for clinical diagnosis and therapeutics of the related diseases. In this review, we first introduce chemical probes to image and regulate protein condensates. Then, we summarized three different categories of chemical probes including general amyloid dye, selective positron emission tomography tracer, and disaggregating binder, which feature distinct interaction pattern and activity upon binding to different pathological amyloid fibrillar aggregates. Next, we discuss the development of chemical probes for tracking protein amorphous aggregates in cells. Finally, we point out future direction in expanding the probes' chemical space and applications.

Keywords: Amyloid aggregation; Chemical probes; Fluorescence imaging; Neurodegenerative diseases; PET tracer; Protein condensation; Protein liquid-liquid phase separation (LLPS).

Publication types

  • Review
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amyloid
  • Humans
  • Neurodegenerative Diseases* / metabolism
  • Tomography, X-Ray Computed*

Substances

  • Amyloid