1H, 15N, and 13C chemical shift backbone resonance NMR assignment of the accumulation-associated protein (Aap) lectin domain from Staphylococcus epidermidis

Biomol NMR Assign. 2023 Jun;17(1):95-99. doi: 10.1007/s12104-023-10126-6. Epub 2023 Apr 6.

Abstract

Staphylococcus epidermidis is the leading causative agent for hospital-acquired infections, especially device-related infections, due to its ability to form biofilms. The accumulation-associated protein (Aap) of S. epidermidis is primarily responsible for biofilm formation and consists of two domains, A and B. It was found that the A domain is responsible for the attachment to the abiotic/biotic surface, whereas the B domain is responsible for the accumulation of bacteria during biofilm formation. One of the parts of the A domain is the Aap lectin, which is a carbohydrate-binding domain having 222 amino acids in its structure. Here we report the near complete backbone chemical shift assignments for the lectin domain, as well as its predicted secondary structure. This data will provide a platform for future NMR studies to explore the role of lectin in biofilm formation.

Keywords: Aap; Biofilm; Lectin; Resonance assignment; Solution NMR; Surface adhesion.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Proteins* / chemistry
  • Biofilms
  • Lectins / metabolism
  • Nuclear Magnetic Resonance, Biomolecular
  • Staphylococcus epidermidis* / metabolism

Substances

  • Bacterial Proteins
  • Lectins