Structure-guided identification of potent inhibitors of ROS1 kinase for therapeutic development against non-small cell lung cancer

J Biomol Struct Dyn. 2024 May;42(8):3837-3847. doi: 10.1080/07391102.2023.2217450. Epub 2023 May 30.

Abstract

Proto-oncogene tyrosine-protein kinase ROS (ROS1) is a member of the sevenless receptor, which affects epithelial cell differentiation and is highly expressed in a variety of tumor cells. The elevated expression and dysfunction of ROS1 have been involved in various malignancies, such as non-small cell lung cancer (NSCLC), stomach cancer, ovarian, breast cancer, cholangiocarcinoma, colorectal cancer, adenosarcoma, oesophageal cancer, etc. ROS1 has been postulated as a potential drug target in anticancer therapeutics. In this study, we carried out a virtual screening of phytochemicals against ROS1 to identify its potential inhibitors. The virtual screening process was performed on the ROS1 structure, where two phytochemicals, Helioscopinolide C and Taiwanin C, were identified. These compounds resulted from filters like Lipinski rule of five, PAINS filter, binding affinities values, and all-atom molecular dynamics (MD) simulations followed by principal component analysis (PCA) and essential dynamics. The findings of this study highlight the role of ROS1 in multiple physiological candidates and its therapeutic targeting using phytochemicals. This study suggests Helioscopinolide C and Taiwanin C as potential compounds for therapeutic development targeting ROS1-associated non-small cell lung cancer for clinical applications. Further in vitro and in vivo experiments are required to validate these findings.Communicated by Ramaswamy H. Sarma.

Keywords: Proto-oncogene tyrosine-protein kinase ROS; drug discovery; molecular dynamics simulation; non-small cell lung cancer; virtual screening.

MeSH terms

  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology
  • Binding Sites
  • Carcinoma, Non-Small-Cell Lung* / drug therapy
  • Humans
  • Lactones / chemistry
  • Lactones / pharmacology
  • Lignans / chemistry
  • Lignans / pharmacology
  • Lung Neoplasms* / drug therapy
  • Lung Neoplasms* / pathology
  • Molecular Docking Simulation*
  • Molecular Dynamics Simulation*
  • Phytochemicals / chemistry
  • Phytochemicals / pharmacology
  • Protein Binding
  • Protein Kinase Inhibitors / chemistry
  • Protein Kinase Inhibitors / pharmacology
  • Protein-Tyrosine Kinases / antagonists & inhibitors
  • Protein-Tyrosine Kinases / chemistry
  • Protein-Tyrosine Kinases / metabolism
  • Proto-Oncogene Mas
  • Proto-Oncogene Proteins / antagonists & inhibitors
  • Proto-Oncogene Proteins / chemistry
  • Proto-Oncogene Proteins / metabolism
  • Structure-Activity Relationship
  • Tyrosine Kinase Inhibitors* / chemistry
  • Tyrosine Kinase Inhibitors* / pharmacology

Substances

  • Antineoplastic Agents
  • MAS1 protein, human
  • Phytochemicals
  • Protein Kinase Inhibitors
  • Protein-Tyrosine Kinases
  • Proto-Oncogene Mas
  • Proto-Oncogene Proteins
  • ROS1 protein, human
  • Tyrosine Kinase Inhibitors
  • taiwanin C
  • Lactones
  • Lignans