Identification of potential SLA-I-specific T-cell epitopes within the structural proteins of porcine deltacoronavirus

Int J Biol Macromol. 2023 Nov 1:251:126327. doi: 10.1016/j.ijbiomac.2023.126327. Epub 2023 Aug 12.

Abstract

Porcine deltacoronavirus (PDCoV) is an emerging swine enteropathogenic coronavirus that mainly threatens newborn piglets and poses a potential broad cross-species transmission risk. The antigenic epitopes of PDCoV are currently unidentified, and no information about T cell epitopes is available. Here, T-cell epitopes of PDCoV structural proteins were predicted using computational methods. 17 epitope peptides were synthesized and then screened using ELIspot, intracellular cytokine staining (ICS), and RT-qPCR detection of IFN-γ mRNA to evaluate their ability to elicit interferon-gamma (IFN-γ) responses in peripheral blood mononuclear cells (PBMCs) from PDCoV-challenged pigs. Five peptides (M1, M2, M3, N6, and S4) elicited high levels of IFN-γ and were investigated further as potential T-cell epitope candidates. All five peptides were cytotoxic T lymphocyte (CTL) epitopes, and two peptides (M3, N6) were recognized simultaneously by CD8 + and CD4 + T cells. A multi-epitope peptide combining the five epitopes (designated "5T") was synthesized and its immune response and protection efficacy was evaluated in a piglet model. ELISpot assay results indicated that 5T induces robust epitope-specific cellular immune responses. Four epitopes (M1, M2, N6, S4) elicited IFN-γ responses in 5T-vaccinated piglets. No obvious protection efficacy was detected in piglets vaccinated with 5T alone. Our results provide valuable information concerning PDCoV-related antigenic epitopes and will be useful in the design of epitope-based vaccines.

Keywords: Cellular immune response; Immune protection; Multi-epitope peptides; Porcine deltacoronavirus; Structural protein; T-cell epitope.

MeSH terms

  • Animals
  • Coronavirus Infections* / immunology
  • Coronavirus Infections* / prevention & control
  • Coronavirus Infections* / virology
  • Deltacoronavirus* / immunology
  • Epitopes, T-Lymphocyte* / immunology
  • Histocompatibility Antigens Class I / immunology
  • Histocompatibility Antigens Class II / immunology
  • Interferon-gamma / immunology
  • Interferon-gamma / metabolism
  • Peptides / chemistry
  • Peptides / immunology
  • Swine
  • Swine Diseases / immunology
  • Swine Diseases / virology
  • Viral Structural Proteins / chemistry
  • Viral Structural Proteins / genetics
  • Viral Structural Proteins / immunology

Substances

  • Epitopes, T-Lymphocyte
  • Interferon-gamma
  • Histocompatibility Antigens Class I
  • Histocompatibility Antigens Class II
  • Viral Structural Proteins
  • swine leukocyte antigen
  • Peptides