The pleiotropic functions of Pri smORF peptides synchronize leg development regulators

PLoS Genet. 2023 Oct 30;19(10):e1011004. doi: 10.1371/journal.pgen.1011004. eCollection 2023 Oct.

Abstract

The last decade witnesses the emergence of the abundant family of smORF peptides, encoded by small ORF (<100 codons), whose biological functions remain largely unexplored. Bioinformatic analyses here identify hundreds of putative smORF peptides expressed in Drosophila imaginal leg discs. Thanks to a functional screen in leg, we found smORF peptides involved in morphogenesis, including the pioneer smORF peptides Pri. Since we identified its target Ubr3 in the epidermis and pri was known to control leg development through poorly understood mechanisms, we investigated the role of Ubr3 in mediating pri function in leg. We found that pri plays several roles during leg development both in patterning and in cell survival. During larval stage, pri activates independently of Ubr3 tarsal transcriptional programs and Notch and EGFR signaling pathways, whereas at larval pupal transition, Pri peptides cooperate with Ubr3 to insure cell survival and leg morphogenesis. Our results highlight Ubr3 dependent and independent functions of Pri peptides and their pleiotropy. Moreover, we reveal that the smORF peptide family is a reservoir of overlooked developmental regulators, displaying distinct molecular functions and orchestrating leg development.

MeSH terms

  • Animals
  • Drosophila / metabolism
  • Drosophila Proteins* / genetics
  • Drosophila Proteins* / metabolism
  • Gene Expression Regulation, Developmental
  • Peptides / genetics
  • Signal Transduction / genetics
  • Ubiquitin-Protein Ligases / genetics
  • Ubiquitin-Protein Ligases / metabolism

Substances

  • Drosophila Proteins
  • Peptides
  • Ubiquitin-Protein Ligases
  • Ubr3 protein, Drosophila
  • Tal protein, Drosophila

Grants and funding

This work was supported by grants from the Agence Nationale de la Recherche to J.Z. (ANR-17-CE13-0002), to Mu.B.(ANR-16 CE12-0021-01) and to Fr.P. (ANR-14-CE11-0010). D.M. was supported by PhD fellowships from Le ministère de la Recherche et de l’Enseignement Supérieur and La Ligue Contre le Cancer. A.P. was supported by ANR-17-CE13-0002 grant and Association pour la Recherche contre le Cancer foundation. D.M., A.P.,Mu.B., Fr.P. and J.Z. are supported by institutional basic support from the Centre National de Recherche Scientifique (CNRS) and Toulouse III University. Fi.P. and Mi.B. were supported by Deutsche Forschungsgemeinschaft (SFB1324). The founders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.