Deciphering the binding mode and structural perturbations in floxuridine-human serum albumin complexation with spectroscopic, microscopic, and computational techniques

Spectrochim Acta A Mol Biomol Spectrosc. 2024 Mar 5:308:123641. doi: 10.1016/j.saa.2023.123641. Epub 2023 Nov 11.

Abstract

The binding mode of antineoplastic antimetabolite, floxuridine (FUDR), with human serum albumin (HSA), the leading carrier in blood circulation, was ascertained using multi-spectroscopic, microscopic, and computational techniques. A static fluorescence quenching was established due to decreased Ksv values with rising temperatures, suggesting FUDR-HSA complexation. UV-vis absorption spectral results also supported this conclusion. The binding constant, Ka values, were found within 9.7-7.9 × 103 M-1 at 290, 300, and 310 K, demonstrating a moderate binding affinity for the FUDR-HSA system. Thermodynamic data (ΔS = +46.35 J.mol-1.K-1 and ΔH = -8.77 kJ.mol-1) predicted the nature of stabilizing forces (hydrogen-bonds, hydrophobic, and van der Waals interactions) for the FUDR-HSA complex. Circular dichroism spectra displayed a minor disruption in the protein's 2° and 3° structures. At the same time, atomic force microscopy images proved variations in the FUDR-HSA surface morphology, confirming its complex formation. The protein's microenvironment around Trp/Tyr residues was also modified, as judged by 3-D fluorescence spectra. FUDR-bound HSA showed better resistance against thermal stress. As disclosed from ligand displacement studies, the FUDR binding site was placed in subdomain IIA (Site I). Further, the molecular docking analysis corroborated the competing displacement studies. Molecular dynamics evaluations revealed that the complex achieved equilibrium during simulations, confirming the FUDR-HSA complex's stability.

Keywords: Atomic force microscopy; Floxuridine; Fluorescence spectroscopy; Human serum albumin; Molecular dynamic simulations.

MeSH terms

  • Binding Sites
  • Circular Dichroism
  • Floxuridine* / metabolism
  • Humans
  • Molecular Docking Simulation
  • Protein Binding
  • Serum Albumin, Human* / chemistry
  • Spectrometry, Fluorescence
  • Thermodynamics

Substances

  • Serum Albumin, Human
  • Floxuridine