Film formation via the drying of ionomer solutions is a crucial process that has a strong influence on the morphology and transport properties of polymer electrolyte membranes and thin films. However, the microscopic mechanism of this process remains unclear. Here, we elucidate this mechanism using a coarse-grained model based on all-atom molecular dynamics that accurately reproduces small-angle X-ray scattering spectra. In dilute ionomer solutions, ionomers form rod-like bundles with diameters of 1.5-2 nm. As the water solvent evaporates, these bundles gradually aggregate and connect to each other, while maintaining their diameter. Finally, the remaining water forms nanosized clusters surrounded by the surfaces of the bundles with hydrophilic sulfonate groups.