HLA-B gene methylation and expression in Behçet's syndrome: a potential role of epigenetics in the pathogenesis

Clin Exp Rheumatol. 2024 Oct;42(10):2014-2020. doi: 10.55563/clinexprheumatol/1sf43v. Epub 2024 Jan 24.

Abstract

Objectives: The HLA-B51 locus has the strongest association with Behçet's syndrome (BS). The presence of a CpG island in the HLA-B gene led us to examine the role of epigenetic regulation in BS.

Methods: HLA-B51 genotyping was performed via sequence-specific PCR in 15 index familial BS cases, 17 affected relatives, 26 unaffected relatives, 46 sporadic BS cases, and 41 healthy controls. HLA-B methylation level was determined using the Zymo OneStep qMethyl kit, and HLA-B51 mRNA level was assessed by quantitative real-time PCR in 14 index familial BS cases, 15 affected relatives, 15 unaffected relatives, 11 sporadic BS cases, and 10 healthy controls.

Results: HLA-B51 carrier ratio was 13/15 in index familial cases, 13/17 in affected relatives, 22/26 in unaffected relatives, 8/25 in healthy controls, and 35/47 in sporadic BS cases. HLA-B51 expression level in HLA-B51+ BS cases was 2.2-fold higher than in their unaffected relatives (p=0.0149) and 1.3-fold higher than in healthy controls (p=0.0188), while sporadic BS cases had a 2.7-fold higher level than healthy controls (p=0.0487). HLA-B promoter methylation was significantly lower in HLA-B51+ familial BS cases than in unaffected relatives (0.4-fold, p=0.01), affected relatives (0.36-fold, p=0.0219), and healthy controls (0.34-fold, p=0.0371) and slightly lower in HLA-B51+ sporadic BS cases than in healthy controls (0.71-fold, p=0.2347). There was an inverse correlation between HLA-B promoter methylation and HLA-B51 expression in HLA-B51+ sporadic BS cases (p=0.0164).

Conclusions: This study indicates epigenetic involvement associated with the HLA-B51 locus in BS, both in familial and sporadic cases. Further studies with larger sample sizes are needed to confirm our results.

MeSH terms

  • Adult
  • Behcet Syndrome* / genetics
  • Case-Control Studies
  • CpG Islands*
  • DNA Methylation*
  • Epigenesis, Genetic*
  • Female
  • Genetic Predisposition to Disease*
  • HLA-B Antigens / genetics
  • HLA-B51 Antigen* / genetics
  • Heredity
  • Humans
  • Male
  • Middle Aged
  • Phenotype
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Young Adult

Substances

  • HLA-B51 Antigen
  • RNA, Messenger
  • HLA-B Antigens