Nonlinear Impact of Electrolyte Solutions on Protein Dynamics

Chembiochem. 2024 Jun 3;25(11):e202400057. doi: 10.1002/cbic.202400057. Epub 2024 May 16.

Abstract

Halophilic organisms have adapted to multi-molar salt concentrations, their cytoplasmic proteins functioning despite stronger attraction between hydrophobic groups. These proteins, of interest in biotechnology because of decreasing fresh-water resources, have excess acidic amino acids. It has been suggested that conformational fluctuations - critical for protein function - decrease in the presence of a stronger hydrophobic effect, and that an acidic proteome would counteract this decrease. However, our understanding of the salt- and acidic amino acid dependency of enzymatic activity is limited. Here, using solution NMR relaxation and molecular dynamics simulations for in total 14 proteins, we show that salt concentration has a limited and moreover non-monotonic impact on protein dynamics. The results speak against the conformational-fluctuations model, instead indicating that maintaining protein dynamics to ensure protein function is not an evolutionary driving force behind the acidic proteome of halophilic proteins.

Keywords: biological activity; molecular dynamics; protein models; protein modifications; salt effect.

MeSH terms

  • Electrolytes / chemistry
  • Hydrophobic and Hydrophilic Interactions
  • Molecular Dynamics Simulation*
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Conformation
  • Proteins / chemistry
  • Proteins / metabolism
  • Solutions

Substances

  • Solutions
  • Electrolytes
  • Proteins